Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3886g00012 ATGGGTAAGTGGTTGAGGACTAGAGTGTTGGGAAGTGGTTCCTATGGCACTGTTTTTCTTGCTATTTCTGCTGCTCCTGGTAGTTGGAAGAAGCCAATAGCCATGAAGAGTTCGAGGCTTGAGTTATCACGTTCCTCGCAGATGGAAGAACATATTTTGAAGTCTTTCACTCTGTGTCCAGAAATCGTTCAAAGCCATGGATGCCAAATCACCAATGAGCAGGGTTTATTGGTATACAATCTTCTATTAGAGTACGCTCCTCACGGTACTCTCTCTCATTTGATCAATAAAGAGCCATTCTTGGATACCAAAGCAACCAAAGTCTACATCCGTGCCCTTCTCAGAGGCCTTTCTTGCATCCATCGGCGAGGCTTTGTCCATTGTGATCTTAAACCTCAAAATATTCTTGTGTTTCCTCCTTGTCCATCACATCAAGACTCTGAGTTTTACTATCAGCTGAAGATTGCAGATTTTGGGCTTTCAAGAACATGTGATGAGAATTTCAATGAAGAGAATTGGAGGTACAAGTTTAGAGGGACTCCTATTTACATGTCACCAGAATCGCTGAGTTTAGGCAAGATAGAAGCACCGTTAGAGATATGGTCTCTCGGTTGTATAGTTCTTGAAATGATCACTGGATATAATGGTTCATGTTGGGATTTTGAAAAGAACACCAAAGATTCCCTCTGGACTGAGCTGGGAATGCAGAGACTTCTTGAAGAAATGTTTTATAAATAA 738 0.4146 MGKWLRTRVLGSGSYGTVFLAISAAPGSWKKPIAMKSSRLELSRSSQMEEHILKSFTLCPEIVQSHGCQITNEQGLLVYNLLLEYAPHGTLSHLINKEPFLDTKATKVYIRALLRGLSCIHRRGFVHCDLKPQNILVFPPCPSHQDSEFYYQLKIADFGLSRTCDENFNEENWRYKFRGTPIYMSPESLSLGKIEAPLEIWSLGCIVLEMITGYNGSCWDFEKNTKDSLWTELGMQRLLEEMFYK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3886g00012 245 ProSitePatterns Protein kinases ATP-binding region signature. 10 36 IPR017441 GO:0005524
Gabi3886g00012 245 ProSiteProfiles Protein kinase domain profile. 4 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00012 245 Pfam Protein kinase domain 7 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00012 245 SMART serkin_6 4 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00012 245 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 223 - -
Gabi3886g00012 245 SUPERFAMILY Protein kinase-like (PK-like) 2 215 IPR011009 -
Gabi3886g00012 245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gabi3886g00012 245 Gene3D Transferase(Phosphotransferase) domain 1 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3886g00012 Gabi-Chr3886 56359 57096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3886g00012 3 218 MAP Kinase Kinase Kinase AT4G36950 36.986 9.71e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3886g00012 Pkinase 9.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3886g00012 - - qsa:O6P43_026965 240.736