Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3886g00006 ATGAAGCTTTCAACAGCAGGATTGGGTCAGCAGGGACATGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCAGGGCCCCTGGTGTCCCTACCAACTGCAGGGGCTCGTGTTGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTGCCACCACAGTTGATTTGCCAACTACACAATGTAACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACCCTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCCATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACATTAACGGCCAGTGACACTAGCACTCATGGAGGGTTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTTTCACTGCAACCTCCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGCGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCATTCGACCACAAACTGTAATGCCATCATCAGTATTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCGGCTGCCCATGCTGCAGCTACTAATAGCTGTTTTACTGTTTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTGCGCAGGTACATGGGTACCATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTTCCGCTTAGGTTGAAACGCCCATGGCATCCTGGCACCTCATCTTTGCATGATGGCAGCGATGAAGCAACTAATGGGTTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGCACTGGTATGTTGCCCTGGATGCAGCAAAAACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTAGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCAACAAATGATGAATTTTCAACAGCCTTTCCAATATCTTCAACAATCCGGAAACAATAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGCACTCACAGAGAACCTGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGATGTCCAAGCACAACAGCAGCAACATAATTATCAAGATACGCTTTTAATTCAAAGTGATCAGCTCCATCAGAGACAACAATCCAGTGTGCCTTCACCATCATATTCAAAACCAGATTTCTTGGATTCAAGCATAAAGTTCCCTGCTTCGGTTTCCCCTGGACAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGAGGCAGTCTCTTGAATTTATCGAGAAATGGTCAGTCCTTACTGACTGAACAGTTATCCCAATCACCATGGACACCAAAGTATGCACCTATGCAGGTCAATGCCTTTGGCAGCACAATGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCCACCACATTGTAATTCAGATGCCCAAAATCCTACTCTCTTTGGTGTCAATATTGATTCATCAGGCCTTCTACTCCCCACCACTGTCCCTGGTTATACCACTTCATCTGCTGATACTGATGCATCAACAATGGCAATAGGAGAGTCTGGATTCCAGGGTTCTCTCTATGCATGCATGCAAGATTCATCAGAGTTTTTGCAAAGTGTAGGGCAAGTTGACCCACAAAACCAGACCCGAACATTTGTCAAGGTTTACAAACCAGGGTCAGTTGGGCGCTCACTTGACATCTCACGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATCGAGGGGAAGTTAGAAGACCCTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACATTCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTATGGTATATCAAAATACTTTCACTTGAAGATATTCAGAAGATGGGAGAGCAAGAAGCCCTTGCTCTCAGTTCAGGACAAAGGCTAAATGGCAGTGGTGCGGAATCTCACGACATTGTTTCTGTACCAACATCAATTGGCTCATTTGAATACTGA 2520 0.4472 MKLSTAGLGQQGHEGEKKCLNSELWHACAGPLVSLPTAGARVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGSDEATNGLMWLRGGPVDQGLNSLNFQGTGMLPWMQQKLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRQQMMNFQQPFQYLQQSGNNNSPLQLQQQQAIQQSVSSNMLQPQAQALTENLSQHLLQKPHNNQDVQAQQQQHNYQDTLLIQSDQLHQRQQSSVPSPSYSKPDFLDSSIKFPASVSPGQNMLSSLCPEGRGSLLNLSRNGQSLLTEQLSQSPWTPKYAPMQVNAFGSTMSHAQYSGKDSAMVPPHCNSDAQNPTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMAIGESGFQGSLYACMQDSSEFLQSVGQVDPQNQTRTFVKVYKPGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSLEDIQKMGEQEALALSSGQRLNGSGAESHDIVSVPTSIGSFEY 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3886g00006 839 SUPERFAMILY CAD & PB1 domains 714 789 - -
Gabi3886g00006 839 MobiDBLite consensus disorder prediction 469 493 - -
Gabi3886g00006 839 Gene3D - 712 804 - -
Gabi3886g00006 839 ProSiteProfiles PB1 domain profile. 716 799 IPR000270 GO:0005515
Gabi3886g00006 839 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gabi3886g00006 839 FunFam Auxin response factor 125 229 - -
Gabi3886g00006 839 Gene3D - 291 363 - -
Gabi3886g00006 839 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3886g00006 839 SMART B3_2 127 229 IPR003340 GO:0003677
Gabi3886g00006 839 MobiDBLite consensus disorder prediction 540 560 - -
Gabi3886g00006 839 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gabi3886g00006 839 FunFam Auxin response factor 711 804 - -
Gabi3886g00006 839 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Gabi3886g00006 839 FunFam Auxin response factor 291 363 - -
Gabi3886g00006 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 804 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3886g00006 839 Gene3D - 125 229 IPR015300 -
Gabi3886g00006 839 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gabi3886g00006 839 Pfam AUX/IAA family 713 799 IPR033389 -
Gabi3886g00006 839 MobiDBLite consensus disorder prediction 540 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3886g00006 Gabi-Chr3886 27404 36577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3886g00006 97 806 B3 DNA Binding Superfamily AT5G37020 69.071 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3886g00006 AUX_IAA 6.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3886g00006 - - gmx:100784373 1515.36