Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3886g00005 ATGCATGCGCAGGGCCCCTGGTGTCCCTACCAACTGCAGGGGCTCGTGTTGTTTACTTCCCTCAGGGTCATAGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTGCCACCACAGTTGATTTGCCAACTACACAATGTAACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACCCTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCCATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACATTAACGGCCAGTGACACTAGCACTCATGGAGGGTTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTTTCACTGCAACCTCCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGCGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCATTCGACCACAAACTGTAATGCCATCATCAGTATTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCGGCTGCCCATGCTGCAGCTACTAATAGCTGTTTTACTGTTTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTGCGCAGGTACATGGGTACCATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTTCCGCTTAGGTTGAAACGCCCATGGCATCCTGGCACCTCATCTTTGCATGATGGCAGCGATGAAGCAACTAATGGGTTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGCACTGGTATGTTGCCCTGGATGCAGCAAAAACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTAGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCAACAAATGATGAATTTTCAACAGCCTTTCCAATATCTTCAACAATCCGGAAACAATAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGCACTCACAGAGAACCTGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGATGTCCAAGCACAACAGCAGCAACATAATTATCAAGATACGCTTTTAATTCAAAGTGATCAGCTCCATCAGAGACAACAATCCAGTGTGCCTTCACCATCATATTCAAAACCAGATTTCTTGGATTCAAGCATAAAGTTCCCTGCTTCGGTTTCCCCTGGACAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGAGGCAGTCTCTTGAATTTATCGAGAAATGGTCAGTCCTTACTGACTGAACAGTTATCCCAATCACCATGGACACCAAAGTATGCACCTATGCAGGTCAATGCCTTTGGCAGCACAATGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCCACCACATTGTAATTCAGATGCCCAAAATCCTACTCTCTTTGGTGTCAATATTGATTCATCAGGCCTTCTACTCCCCACCACTGTCCCTGGTTATACCACTTCATCTGCTGATACTGATGCATCAACAATGGCAATAGGAGAGTCTGGATTCCAGGGTTCTCTCTATGCATGCATGCAAGATTCATCAGAGTTTTTGCAAAGTGTAGGGCAAGTTGACCCACAAAACCAGACCCGAACATTTGTCAAGGTTTACAAACCAGGGTCAGTTGGGCGCTCACTTGACATCTCACGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATCGAGGGGAAGTTAGAAGACCCTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACATTCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTATGGTATATCAAAATACTTTCACTTGAAGATATTCAGAAGATGGGAGAGCAAGAAGCCCTTGCTCTCAGTTCAGGACAAAGGCTAAATGGCAGTGGTGCGGAATCTCACGACATTGTTTCTGTACCAACATCAATTGGCTCATTTGAATACTGA 2436 0.4454 MHAQGPWCPYQLQGLVLFTSLRVIVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGSDEATNGLMWLRGGPVDQGLNSLNFQGTGMLPWMQQKLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRQQMMNFQQPFQYLQQSGNNNSPLQLQQQQAIQQSVSSNMLQPQAQALTENLSQHLLQKPHNNQDVQAQQQQHNYQDTLLIQSDQLHQRQQSSVPSPSYSKPDFLDSSIKFPASVSPGQNMLSSLCPEGRGSLLNLSRNGQSLLTEQLSQSPWTPKYAPMQVNAFGSTMSHAQYSGKDSAMVPPHCNSDAQNPTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMAIGESGFQGSLYACMQDSSEFLQSVGQVDPQNQTRTFVKVYKPGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSLEDIQKMGEQEALALSSGQRLNGSGAESHDIVSVPTSIGSFEY 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3886g00005 811 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 776 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3886g00005 811 SUPERFAMILY CAD & PB1 domains 686 761 - -
Gabi3886g00005 811 FunFam Auxin response factor 683 776 - -
Gabi3886g00005 811 MobiDBLite consensus disorder prediction 441 465 - -
Gabi3886g00005 811 Pfam B3 DNA binding domain 99 200 IPR003340 GO:0003677
Gabi3886g00005 811 Pfam AUX/IAA family 685 771 IPR033389 -
Gabi3886g00005 811 Gene3D - 97 201 IPR015300 -
Gabi3886g00005 811 MobiDBLite consensus disorder prediction 512 532 - -
Gabi3886g00005 811 Gene3D - 263 335 - -
Gabi3886g00005 811 ProSiteProfiles PB1 domain profile. 688 771 IPR000270 GO:0005515
Gabi3886g00005 811 ProSiteProfiles B3 DNA-binding domain profile. 99 201 IPR003340 GO:0003677
Gabi3886g00005 811 Gene3D - 684 776 - -
Gabi3886g00005 811 SMART B3_2 99 201 IPR003340 GO:0003677
Gabi3886g00005 811 FunFam Auxin response factor 97 201 - -
Gabi3886g00005 811 CDD B3_DNA 98 199 IPR003340 GO:0003677
Gabi3886g00005 811 MobiDBLite consensus disorder prediction 512 530 - -
Gabi3886g00005 811 FunFam Auxin response factor 263 335 - -
Gabi3886g00005 811 Pfam Auxin response factor 225 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3886g00005 811 SUPERFAMILY DNA-binding pseudobarrel domain 83 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3886g00005 Gabi-Chr3886 27404 36577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3886g00005 69 778 B3 DNA Binding Superfamily AT5G37020 69.071 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3886g00005 AUX_IAA 6.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3886g00005 - - gmx:100784373 1414.05