Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3886g00004 ATGAAGCTTTCAACAGCAGGATTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCAGGGCCCCTGGTGTCCCTACCAACTGCAGGGGCTCGTGTTGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTGCCACCACAGTTGATTTGCCAACTACACAATGTAACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACCCTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCCATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACATTAACGGCCAGTGACACTAGCACTCATGGAGGGTTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTTTCACTGCAACCTCCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGCGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCATTCGACCACAAACTGTAATGCCATCATCAGTATTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCGGCTGCCCATGCTGCAGCTACTAATAGCTGTTTTACTGTTTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTGCGCAGGTACATGGGTACCATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTTCCGCTTAGGTTGAAACGCCCATGGCATCCTGGCACCTCATCTTTGCATGATGGCAGCGATGAAGCAACTAATGGGTTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGCACTGGTATGTTGCCCTGGATGCAGCAAAAACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTAGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCAACAAATGATGAATTTTCAACAGCCTTTCCAATATCTTCAACAATCCGGAAACAATAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGCACTCACAGAGAACCTGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGATGTCCAAGCACAACAGCAGCAACATAATTATCAAGATACGCTTTTAATTCAAAGTGATCAGCTCCATCAGAGACAACAATCCAGTGTGCCTTCACCATCATATTCAAAACCAGATTTCTTGGATTCAAGCATAAAGTTCCCTGCTTCGGTTTCCCCTGGACAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGAGGCAGTCTCTTGAATTTATCGAGAAATGGTCAGTCCTTACTGACTGAACAGTTATCCCAATCACCATGGACACCAAAGTATGCACCTATGCAGGTCAATGCCTTTGGCAGCACAATGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCCACCACATTGTAATTCAGATGCCCAAAATCCTACTCTCTTTGGTGTCAATATTGATTCATCAGGCCTTCTACTCCCCACCACTGTCCCTGGTTATACCACTTCATCTGCTGATACTGATGCATCAACAATGGCAATAGGAGAGTCTGGATTCCAGGGTTCTCTCTATGCATGCATGCAAGATTCATCAGAGTTTTTGCAAAGTGTAGGGCAAGTTGACCCACAAAACCAGACCCGAACATTTGTCAAGGTTTACAAACCAGGGTCAGTTGGGCGCTCACTTGACATCTCACGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATCGAGGGGAAGTTAGAAGACCCTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACATTCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTATGGTATATCAAAATACTTTCACTTGAAGATATTCAGAAGATGGGAGAGCAAGAAGCCCTTGCTCTCAGTTCAGGACAAAGGCTAAATGGCAGTGGTGCGGAATCTCACGACATTGTTTCTGTACCAACATCAATTGGCTCATTTGAATACTGA 2523 0.4475 MKLSTAGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGARVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGSDEATNGLMWLRGGPVDQGLNSLNFQGTGMLPWMQQKLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRQQMMNFQQPFQYLQQSGNNNSPLQLQQQQAIQQSVSSNMLQPQAQALTENLSQHLLQKPHNNQDVQAQQQQHNYQDTLLIQSDQLHQRQQSSVPSPSYSKPDFLDSSIKFPASVSPGQNMLSSLCPEGRGSLLNLSRNGQSLLTEQLSQSPWTPKYAPMQVNAFGSTMSHAQYSGKDSAMVPPHCNSDAQNPTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMAIGESGFQGSLYACMQDSSEFLQSVGQVDPQNQTRTFVKVYKPGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSLEDIQKMGEQEALALSSGQRLNGSGAESHDIVSVPTSIGSFEY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3886g00004 840 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gabi3886g00004 840 MobiDBLite consensus disorder prediction 541 561 - -
Gabi3886g00004 840 FunFam Auxin response factor 292 364 - -
Gabi3886g00004 840 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Gabi3886g00004 840 Gene3D - 126 230 IPR015300 -
Gabi3886g00004 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3886g00004 840 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gabi3886g00004 840 FunFam Auxin response factor 712 805 - -
Gabi3886g00004 840 Gene3D - 713 805 - -
Gabi3886g00004 840 Gene3D - 292 364 - -
Gabi3886g00004 840 MobiDBLite consensus disorder prediction 470 494 - -
Gabi3886g00004 840 ProSiteProfiles PB1 domain profile. 717 800 IPR000270 GO:0005515
Gabi3886g00004 840 Pfam AUX/IAA family 714 800 IPR033389 -
Gabi3886g00004 840 SUPERFAMILY CAD & PB1 domains 715 790 - -
Gabi3886g00004 840 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gabi3886g00004 840 SMART B3_2 128 230 IPR003340 GO:0003677
Gabi3886g00004 840 MobiDBLite consensus disorder prediction 541 559 - -
Gabi3886g00004 840 FunFam Auxin response factor 126 230 - -
Gabi3886g00004 840 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3886g00004 Gabi-Chr3886 27404 36577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3886g00004 98 807 B3 DNA Binding Superfamily AT5G37020 69.071 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3886g00004 AUX_IAA 6.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3886g00004 - - gmx:100784373 1522.29