Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3886g00001 ATGAAGCAACTCAAGCTCTTAGCCTTAACATTGTTCATGTTGTGGTCATGGTGGAGCTTTCATGGTGCAATAGGAGACCCTCAAACACGTTTACTCAACAAGGGTTGTAGCCAATACAACGCAACAAACTTGTCAAACTTCTACCAAAATCTAAACTCAACTTTGGAAGAGTTGAGAACAAAGGTGAATAACCAAAGCAAGCACTTTGCCACAGCACAACAAGCCATGGGAACAGACCCTGTCTATGCTATGTTTCAATGCAGAAACTACCTCTCCAACACTGACTGCGCCGCCTGCTTCGCCACGGCTGCCGCCCAAATCCGCAACTGCTCCGCCGGAGCCAACGGTGCCCGTGTCATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAGTGGCTTCTTTGACCAGACCACTATGCCTGGCAATAGTGTGATTTGTGGAAATCAGACTGCAGTTGGAGCCAATGCTTTTGACGCAGTTGCACAACAAGCACTAATGGATCTGCAAATAGCAACACCCAAAATTACAGGTTTCTTTGCAGCTACCAAGACACAAGTTGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAAATGTCACAGAGAGTGGTTGTCTTGATTGCTTAACAGTTGGATACAACAACATACAAAGTTGTTTTCCCAATACAGATGGTAAAGCATTTGATGCTGGGTGTTTTATGAGATATTCAGAGACACCCTTCTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTAAAAGGAGGTTCAAGCAAGAATGGGGCCATTATTGTTGCTGTTGTTGGAGTTGTAGGTCTTATTGTGATTGTGATCCTCCTTGCACTATTTCTCTGGCTAAGAGGGTACAAGAAACCCAAGTGGGTTCCTAGAGGTGACATATTGGGAGTAACTGAGTTGAAAGGTCCAATTAACTACAGGTATAAAGATTTGAAGTCTGCAACAAAAAATTTCAGTGATGAAACTAAACTAGGAGGAGGAGGTTTTGGAGATGTATACAAGGGTACTCTGAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTAATTTTAGGCAAATCCAGCAAGTTGGATGAACATTTTGAAAGTGAAGTCAAGCTTATAAGCAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCTGTAAAGGAAAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGCTCGGACAGATTCTTATTTGGTGAAAATAAGGGTTCTCTCAACTGGAAACAACGGTATGATATTATTTTAGGCACAGCAAGGGGTCTGGCCTATCTACACGAGGATTTCCATGTTTGCATCATACATAGAGATATAAAGACTAACAATATTCTCTTGGATGAGGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGGCTTCTACCAGAGGACCAATCTCATCTTAGCACAAAATTTGCTGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCCGATACGTACAGCTTTGGTGTTGTAGTCTTAGAAATCATAAGTGGCCAAAAGAGCTGTGAATTGAGGGCTGATATTGAAGGTGAACTCCTCCTTCAAAGGGCATGGAGATTGTACGAGGAAGATATGCACTTGGAGTTGGTTGACAATACATTGGACCCTCATGACAATGATGCAGAAGAAATAAAGAAAGTTATAGAGATTGCTTTGCTGTGCACTCAAGCATCATCCGCTGCAAGACCAACAATGTCTGAAGTAGTAGTCCTACTCAAAAGCAAGAACTTGCCGGAGCATATGAAGCCAAGTATGCCATTTGGTGTGAGCTTATAA 1851 0.4219 MKQLKLLALTLFMLWSWWSFHGAIGDPQTRLLNKGCSQYNATNLSNFYQNLNSTLEELRTKVNNQSKHFATAQQAMGTDPVYAMFQCRNYLSNTDCAACFATAAAQIRNCSAGANGARVIYDGCFLRYESSGFFDQTTMPGNSVICGNQTAVGANAFDAVAQQALMDLQIATPKITGFFAATKTQVAGGAIYAIAQCAENVTESGCLDCLTVGYNNIQSCFPNTDGKAFDAGCFMRYSETPFFADNQTIDITPFLKGGSSKNGAIIVAVVGVVGLIVIVILLALFLWLRGYKKPKWVPRGDILGVTELKGPINYRYKDLKSATKNFSDETKLGGGGFGDVYKGTLKNGKVVAVKKLILGKSSKLDEHFESEVKLISNVHHRNLVRLLGCCCKGKERILVYEYMANNSSDRFLFGENKGSLNWKQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDEDLQPRIADFGLARLLPEDQSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIISGQKSCELRADIEGELLLQRAWRLYEEDMHLELVDNTLDPHDNDAEEIKKVIEIALLCTQASSAARPTMSEVVVLLKSKNLPEHMKPSMPFGVSL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3886g00001 616 Gene3D Phosphorylase Kinase; domain 1 304 402 - -
Gabi3886g00001 616 SUPERFAMILY Protein kinase-like (PK-like) 311 606 IPR011009 -
Gabi3886g00001 616 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
Gabi3886g00001 616 FunFam Cysteine-rich receptor-like protein kinase 2 141 242 - -
Gabi3886g00001 616 Coils Coil 48 68 - -
Gabi3886g00001 616 CDD STKc_IRAK 332 598 - -
Gabi3886g00001 616 SMART serkin_6 326 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00001 616 ProSiteProfiles Gnk2-homologous domain profile. 139 242 IPR002902 -
Gabi3886g00001 616 Pfam Salt stress response/antifungal 152 239 IPR002902 -
Gabi3886g00001 616 Pfam Salt stress response/antifungal 36 130 IPR002902 -
Gabi3886g00001 616 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi3886g00001 616 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Gabi3886g00001 616 ProSiteProfiles Protein kinase domain profile. 326 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00001 616 FunFam Cysteine-rich receptor-like protein kinase 2 293 402 - -
Gabi3886g00001 616 Gene3D - 28 133 IPR038408 -
Gabi3886g00001 616 Gene3D - 142 242 IPR038408 -
Gabi3886g00001 616 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Gabi3886g00001 616 Pfam Protein kinase domain 327 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3886g00001 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gabi3886g00001 616 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 608 - -
Gabi3886g00001 616 FunFam Cysteine-rich receptor-like protein kinase 2 403 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3886g00001 Gabi-Chr3886 6817 12376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3886g00001 4 612 Receptor kinase-like Gene Family AT1G70520 36.800 4.59e-127 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3886g00001 Pkinase 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3886g00001 - - gmx:100813585 982.63