Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3883g00040 ATGGCTTCTAGGCCGCGTAAAAAAGCAGCTATGCAGCACAAGTTGGAACAACTTCGATCTCTCACAAATTCCAGTGCTATGAACAAAGCCTCAATTATTGTGGATGCCACAAGATACATTGAGGAGTTGAAGCAAAAAGTAGAGGGACTGAACACAGAGCTTGGAACTGCAGAATCATCAACCTCCCAAGATGAACTACCCAAGGTGACCGTAGAAACCCTAGAAAGGGGTTTCCTCATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTCGAAGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGAAAATCAAGAGAATGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCAATCAAAAACATGGATTAA 450 0.4467 MASRPRKKAAMQHKLEQLRSLTNSSAMNKASIIVDATRYIEELKQKVEGLNTELGTAESSTSQDELPKVTVETLERGFLINVFSERNCPGMLVAILEAFEELGLDVLDARVSCEDTFQLEAVGGENQENESIDAQVVKQAVLQAIKNMD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3883g00040 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 57 IPR036638 GO:0046983
Gabi3883g00040 149 CDD ACT_UUR-ACR-like 89 145 - -
Gabi3883g00040 149 ProSiteProfiles ACT domain profile. 80 149 IPR002912 -
Gabi3883g00040 149 Coils Coil 33 60 - -
Gabi3883g00040 149 Gene3D - 3 59 IPR036638 GO:0046983
Gabi3883g00040 149 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3883g00040 Gabi-Chr3883 631307 632766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3883g00040 11 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.174 4.66e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3883g00040 - - gmx:100499821 254.988