Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3883g00037 ATGCTACCAAGGACAAGTGTTGGAGATGGTTTCCGTGTTAGTTTGTCGAGTACACCTAGCAATTCAAGCGGAGGATCTGATCCAGATGACATAGAGTCACTAGGTGATGTTTACATATGGGGAGAGGTTTTGGCAGATGGTGTTTCACCTGATGGGAGTGGAATTCAGGTCCCTTCTAAAACAGATGTGCTTATTCCTAGGCCTTTAGAGTCAAATGTTGTTCTTGATGTTCATCACATTGCATCTGGTGCACGCCACGTTGCTATAATAACCAGGCAAGGAGAGGTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGCCACCCCAATCTAGTTGAGTTTCCGGAAGTTTGTAATTTCGATTTTGTTGCATGTGGAGAGTATCATACATGTGCTGTATCTAAATCTGATGATCTTTTCACTTGGGGTGATGGTACACATAATGCTGGACTTCTTGGCCATGGTACTGAGGTTAGCCACTGGATACCAAAGAGGATGAATGGCCCTTTGGAAGGACTTCAAGTTGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCTAATGGAAAGCTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATCAAGAGAGTGTGTGGTATCCAAAGGAGGTACAATTATTAAGTGGACTAAAGACTATTAAGGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTTATGTTTCAGTCTGGTTCAAGTGTTTCCCCATGGAAGCTCTTCACATGGGGTGATGGGGACAAATATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCAACCAGGGTCTCTCCACTTACTGAATATAATTTCCACCAGATAGCATGTGGGCACACCATGACTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAGGCACTGAACATGGTCAATTAGGAAATCCTACTTCTGCTGGAAAAGTACCTACTCTAGTCCAAGATAAGTTGCTAGGTGAGTTTGTTGATGAGATATCATGTGGAGCACATCATGTTGCTGTCTTGACATCTAGAAGTGAACTTTATACATGGGGAAGAGGTGCAAATGGAAGATTGGGGCATGGAGACACAGAAAATAGGGATTCTCCTAAGTTGGTGGTAGCCTTAAAAGATAGGCATGTAAAAAATATATCATGTGGCTCAAATTTTACATCTTGTATATCCATCCATAAATGGGTCACTGGAACTGACCAATCTGTTTGCACTGGATGTAGACAAGCATTTGGTTTAACAAGAAAGAGGCACAATTGTTATAATTGTGGTTTAGTTTATTGCCACTCTTGTAGTTCTAGAAAGGTATTGAAAGCAGCATTGGCACCAAGACCAGAAAAACCTCATCGTGTATGTGATACTTGTTATGCTAAGATTAAAGTTGTTGAGGCTTCTAGTGCTTCCAAGTTAAATAGAAAAGCTACTCCTTCTCATTATTCAACAAATGGTAGTGAAAGATTAGGCAAGGGAGTAGTAAGGTCTGTGAGAACTCTCTTTTCTCCACACACTGAACCAGTGAAGTACCTTGAGATAAGGAATAGTAAGCCTGGAAGCAAATGTGATTCTACTTCCTTTGTCCGAGCTTCTCAAGTTCCATCTCCTTCACAGTTGAAAGATATTGCATTTCCAAGTGCACTGAGTTCTATTCAAAGTGTTTTGAAGCTTGCTATACCTCCAATTCCATCACCAATTGAACCTGCTAATTCAAGACCCTCATCCCCACATACAAGAAGACCAAGCCCTCCTCGTTCTTCCAGTCCTAGATTTTCTGGAAGTCTTATCGAAAGTTTGAGAAAGAAAAGTGACCTTTTGAACCAAGAACTCTCAAAATTGCAGAACCAAATTCAAAGTTTGGAGCAGAGAAGTGACATGCAAGATTGGGAAATTCAGAAGCTTCAGAGAAAGGCTACGGAAGCTACTGCCATGGCTGCAGTGGAATCTTCTAATTTTAGAGTAGCAAAAGAATTTATTGAATCTACTACAGATAAGTTGAAGGAAATGACTGAGAAGCTACCACCAGAAATTCCACAAAGTAAAATTTTGAGCACCATACATACTAGAGCTGAAGATTTTTTAAAAGAAATTTCAGAAGCTGAAACATCTTCCTCACCATCAAAGGAAGAGTCTGCGCAACATAAGGCATCTGATATACCTGCCTCAGAAAGTGGCACTTCTGATTTGCAAGAACACAGACTAGAAGAAAATGTTGATGCTGCAGTAGATGACCCTTGTCAAGATGGAGGAAATTTTCTTGAAGAAAGTAATGGATCAAAATTGGAGTCTGAGCCTCGAAATGTACCTGATATACCTGCCTCAGATAGTGGCACTTCGGAATTGCAAGAACACAAACTGCTAGAAGAAAATGTTGATGCAGCAGGAGTTGACCCTTTTCAAGATGGAGGTAATTTCCTTGAAGAAAGTAATGGATCAAAGTTGGAGTATGAACAACAAAATGCACCTGATATACCTGACTTGGATAGTGGCACTTCTGAATTGCAAGAACAAAGATTACAAGAAAATGTTGATGCTGTAGGAGTTGACCCTAATCAAGATGGAGGAAATTCTATTGAAGAAAGTAATGGATTAAAGTTGGAGTCTGAGCAACAAAATGCACCTGATATACCTGCCTCAGATAGTGGCACTTCTGAACTGCATGAACACAGACTAGAAGAAAATGCTGACCCTGCAAGAGTTGATCAACCTCAGACTGGAGGACATGTCCTTCAAAAAAGTGATGGATCAGCTGTGTCTAGTACTGGAACAGCAATGCCGCCACAAAACGTGGAAAATGGTTCAAGATCACTGGATTCTTCAAGACTTGGTAGACAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGATACTCATGCTGCGGCCTGATGGTATCAAAGTTTTTAGAAGAGTTAAATTCGGCAAGCGAAGGTTCACTGAAACTCAAGCACAAGAATGGTGGAACCAAAACAAAGGTAGGGTTCTTAGGAAATACAGTCTATCACATCAAAAGCTAACAACTGGATCATCTAACATCACACCACATGCCAAAGAAAAAATTGAGACATCGCCTTCATAA 3159 0.4096 MLPRTSVGDGFRVSLSSTPSNSSGGSDPDDIESLGDVYIWGEVLADGVSPDGSGIQVPSKTDVLIPRPLESNVVLDVHHIASGARHVAIITRQGEVFTWGEESGGRLGHGIDKDFGHPNLVEFPEVCNFDFVACGEYHTCAVSKSDDLFTWGDGTHNAGLLGHGTEVSHWIPKRMNGPLEGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVWYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSSVSPWKLFTWGDGDKYRLGHGNKETYLQPTRVSPLTEYNFHQIACGHTMTVALTTSGHVFTMGGTEHGQLGNPTSAGKVPTLVQDKLLGEFVDEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTENRDSPKLVVALKDRHVKNISCGSNFTSCISIHKWVTGTDQSVCTGCRQAFGLTRKRHNCYNCGLVYCHSCSSRKVLKAALAPRPEKPHRVCDTCYAKIKVVEASSASKLNRKATPSHYSTNGSERLGKGVVRSVRTLFSPHTEPVKYLEIRNSKPGSKCDSTSFVRASQVPSPSQLKDIAFPSALSSIQSVLKLAIPPIPSPIEPANSRPSSPHTRRPSPPRSSSPRFSGSLIESLRKKSDLLNQELSKLQNQIQSLEQRSDMQDWEIQKLQRKATEATAMAAVESSNFRVAKEFIESTTDKLKEMTEKLPPEIPQSKILSTIHTRAEDFLKEISEAETSSSPSKEESAQHKASDIPASESGTSDLQEHRLEENVDAAVDDPCQDGGNFLEESNGSKLESEPRNVPDIPASDSGTSELQEHKLLEENVDAAGVDPFQDGGNFLEESNGSKLEYEQQNAPDIPDLDSGTSELQEQRLQENVDAVGVDPNQDGGNSIEESNGLKLESEQQNAPDIPASDSGTSELHEHRLEENADPARVDQPQTGGHVLQKSDGSAVSSTGTAMPPQNVENGSRSLDSSRLGRQGETQVIEQFEPGVYVILMLRPDGIKVFRRVKFGKRRFTETQAQEWWNQNKGRVLRKYSLSHQKLTTGSSNITPHAKEKIETSPS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3883g00037 1052 Pfam Transcription factor regulating root and shoot growth via Pin3 971 1025 IPR013591 -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 847 862 - -
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Gabi3883g00037 1052 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 588 615 - -
Gabi3883g00037 1052 Coils Coil 619 660 - -
Gabi3883g00037 1052 SMART fyve_4 415 486 IPR000306 GO:0046872
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Gabi3883g00037 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Gabi3883g00037 1052 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 683 - -
Gabi3883g00037 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 492 IPR013083 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 147 196 IPR000408 -
Gabi3883g00037 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Gabi3883g00037 1052 Gene3D - 260 414 IPR009091 -
Gabi3883g00037 1052 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 721 967 - -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 905 920 - -
Gabi3883g00037 1052 ProSiteProfiles BRX domain profile. 971 1026 IPR013591 -
Gabi3883g00037 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 929 967 - -
Gabi3883g00037 1052 SUPERFAMILY FYVE/PHD zinc finger 419 488 IPR011011 -
Gabi3883g00037 1052 SUPERFAMILY RCC1/BLIP-II 34 419 IPR009091 -
Gabi3883g00037 1052 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Gabi3883g00037 1052 Pfam Transcription factor BRX N-terminal domain 671 704 IPR027988 -
Gabi3883g00037 1052 CDD FYVE_like_SF 429 481 - -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 1033 1052 - -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Gabi3883g00037 1052 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 10 28 - -
Gabi3883g00037 1052 MobiDBLite consensus disorder prediction 877 902 - -
Gabi3883g00037 1052 Gene3D - 157 259 IPR009091 -
Gabi3883g00037 1052 Gene3D - 16 156 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3883g00037 Gabi-Chr3883 495812 500460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3883g00037 965 1027 Major Intrinsic Protein MIP AT1G31880 30.159 2.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3883g00037 - - gmx:100798841 1300.8