Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3883g00004 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGCTAGCTAATGGTGGCTTGGAAGGGGAGAAGAATGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGCTTCTGATTCTGTGGAAAAATCAGCTATAGATACTCCTAAGGAACCAAAAGACTCAAAAACTGTGTCATCACCTTCTGGGTCATCAAAAAGATCCCGTCTTTATAATGGATCACAGAATATGTCTTGCTCAGTTGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGACATAGGGTCTGTGAAAAGCACTCCAAAACCCCTGTTGTGTTGGTAGCGGGCAAGCAGCAGAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGCGGAATTTGATGAAGTCAAGAGGAGTTGCAGGAAACGTCTTGATGGGCATAATAGGCGTAGGAGGAAACCTCAGCCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCAATTTGATAGCCCTCAGGCATATGCAAACCCCATTATGAGAAATATGTGGCCTGCCACTACCAAAACTGGAGCTGAATCCAGTTATGATCATCACCGACTTTTATATAGAATTGACAAGCATTGGCAGGATAAGGGACTTCCTCTTTGGCAAGAAAATGGCCCTAAAATAAGCAATGGTAATGAAGCAATGCCTGGAGCTCCCATTTGTGGTGCCATTGCCTCATCAGCAGCTGGAAAGAGAAGCAGGAAACTGTCTTCTGATGGCAAACCTGGATCTTTTGACTCAGGCTGTGCTCTCTATCTTCTGTCAACACTTAAAACACAAAGTTCAGAGTTGAGTTTGGTGCAATCCAGCATCACCTGTCCAATACAATCTCCATCAGGAGCTGTGAGTTTTGATGCTGCGGACGAGTTCTCATGCTCAGAAAGTGCAAAAGATAATAAGCCTAATGGTCCAGTATTTGTTCTTGATGCAAACACTACCAACCTTCATTGCAATGGAATGCTGCAAATGGTGCCTGATGGATTGATGGAAAATGGGGACTCCCTGACCCTTCCCTTTTTCTGGGAGTAG 1107 0.449 MDWDWKEFAWDPSGLELANGGLEGEKNEAASVDLRLGEASDSVEKSAIDTPKEPKDSKTVSSPSGSSKRSRLYNGSQNMSCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVAGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILQFDSPQAYANPIMRNMWPATTKTGAESSYDHHRLLYRIDKHWQDKGLPLWQENGPKISNGNEAMPGAPICGAIASSAAGKRSRKLSSDGKPGSFDSGCALYLLSTLKTQSSELSLVQSSITCPIQSPSGAVSFDAADEFSCSESAKDNKPNGPVFVLDANTTNLHCNGMLQMVPDGLMENGDSLTLPFFWE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3883g00004 368 ProSiteProfiles Zinc finger SBP-type profile. 78 155 IPR004333 GO:0003677
Gabi3883g00004 368 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 304 IPR044817 GO:0003677
Gabi3883g00004 368 FunFam Squamosa promoter-binding-like protein 14 72 142 - -
Gabi3883g00004 368 MobiDBLite consensus disorder prediction 28 56 - -
Gabi3883g00004 368 Pfam SBP domain 81 154 IPR004333 GO:0003677
Gabi3883g00004 368 Gene3D - 72 142 IPR036893 GO:0003677|GO:0005634
Gabi3883g00004 368 SUPERFAMILY SBT domain 79 160 IPR036893 GO:0003677|GO:0005634
Gabi3883g00004 368 MobiDBLite consensus disorder prediction 16 74 - -
Gabi3883g00004 368 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3883g00004 Gabi-Chr3883 38408 40513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3883g00004 1 179 SBP-box Gene Family AT5G50670 45.000 2.66e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3883g00004 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3883g00004 - - lja:Lj1g3v3847150.1 594.349