Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3882g00003 ATGGGTAGTGGTCAGGAAAATGCAATGGGGTTTCAACATGGAAATGAGAGCATTCTGACTTGTCCTTCATCGGGTTTGAGTGCAAATGTTTCAGAGATGGATATTAGTTCTGTGTCTATGGTTAAGCCTTCTTCAGATGTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCTTCAATTGTTTCTCATAGTGAGTTTGCCAATGCCAATTCATCTTACCCTCTTGTTTTGGAAAATCAGGGAATGAGCAGCAACTCTCACCTCGTTCAATACATGTCTGAGTCAAATCTTGCGGGCATGGTTCCCAAGGTTCTTCCCTCCTATGGAAGTGGAAGCTTCTCAGAAATGGTTGGTTCCTTTGGCCAACCTGGGTCTGGTGACATAGCTGACACAGGGTATCGATCACATTATAATCCCAGCAAGGATATTGGAATCGAAAGGGCAACAATACATGGTGAACAATCTCAGATTGAGGACTCAACTCTTGAAGAGGGAGCCCCAGGATCTGCACCTAGTGGACTTAGGAGAAAACGAGGGCTTGATCATAATTCTACTTTCAGTCCAAACAAGAATGCTGAGAGTGATTTGCTGAAAGATTCTCCTATGAAGAGCTCTGATGGTGCAAAAGAACATGAAAAGAAACCAAAAGTTGAGCACAATACTAGTGCTGATTTGCGTGGGAAGCAAGCTAAAGATATCTCTCTCAGTGGAGAAGCTCCCAAAGATAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACGAACAGCCACAGCCTTGCAGAAAGGGTGCGAAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATCATAAACTATGTACAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAATTTTGATGTAGAAAGGATTCTATCCAAGGATATTCTCCAATCACGCATAGGACATGGAATTGGTGGATATGGTCCTAACATCAGTTCCTCCCACCCATTCAACAATGGAAGTTTCCAGGGTACCATGGCTGGCATGCCTAGTACATCAACACAATTCCCTCCTTTGCCCCAGACTGTTTTGGACCATGAGTTTCAAAGCTTCTATGGAATGGGATATGATTCCAATACAGCACTTGACAATTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1287 0.4359 MGSGQENAMGFQHGNESILTCPSSGLSANVSEMDISSVSMVKPSSDVANPFLASSAWDPLVSLSQAQTFGGSSSIVSHSEFANANSSYPLVLENQGMSSNSHLVQYMSESNLAGMVPKVLPSYGSGSFSEMVGSFGQPGSGDIADTGYRSHYNPSKDIGIERATIHGEQSQIEDSTLEEGAPGSAPSGLRRKRGLDHNSTFSPNKNAESDLLKDSPMKSSDGAKEHEKKPKVEHNTSADLRGKQAKDISLSGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGHGIGGYGPNISSSHPFNNGSFQGTMAGMPSTSTQFPPLPQTVLDHEFQSFYGMGYDSNTALDNLGPNGRLKTEL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3882g00003 428 FunFam Basic helix-loop-helix transcription factor 265 337 - -
Gabi3882g00003 428 Pfam Helix-loop-helix DNA-binding domain 271 319 IPR011598 GO:0046983
Gabi3882g00003 428 CDD bHLH_AtBPE_like 258 343 - -
Gabi3882g00003 428 SMART finulus 274 324 IPR011598 GO:0046983
Gabi3882g00003 428 Gene3D - 265 339 IPR036638 GO:0046983
Gabi3882g00003 428 MobiDBLite consensus disorder prediction 169 254 - -
Gabi3882g00003 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 336 IPR036638 GO:0046983
Gabi3882g00003 428 MobiDBLite consensus disorder prediction 211 241 - -
Gabi3882g00003 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 318 IPR011598 GO:0046983
Gabi3882g00003 428 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 173 374 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3882g00003 Gabi-Chr3882 37069 40623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3882g00003 9 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 44.104 3.30e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3882g00003 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3882g00003 - - gmx:100794464 665.611