Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3881g00005 ATGATTAGTGCAAGTGCTAGAAATAGGTCTCCATTCACAGCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTAACAGGAACACCCATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACTCTTCAATATCTTCAAGACTCTTCCCACATCATCCAAAATACATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAACCTGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACAAGCAGCACCGCCACAAGCACCACACAAACAATCCCATCATATAACAGAAATCTTTCCTTGAGCAACACCAACATTCCTTCGGCATCTTCTTTTCCTTTCTCTCCATTGCCCTCATCTATGTCCTGTGACTCCCAACCCTTTTCACAATCTTACCAAAACTCTTCTCTAAACCCCTTCTTTTACACCCAATCAACCTCTTCTAGACCACCTGATTCTGATTTTCCACCTCAAGATGCCACTACTCATCAGCTACTTATGGACTCTGGGTCTTATTCTCAGGATGAAAAGGATTATAGGAACGTTCATGGAATAAGGGAGGGTGTGGATGAACGAGCTTTCTTCCCAGAAGCTTCAGGGTCTGCTAGGAATTATCCTGACTCATATCAACAACTATCAATGAGCTCTTATAAGTCCTATTCAAACTCCCAATTTCAGAACATCAATGATAACCCAAGACAGCAAGAGCAACATTGTTTTGTTTTGGGTACTGACTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAACTACTGAGACAACCCAAAGACCCCTTCACCATTTCTTTGGGGAATGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTGATGATCCTATGAATGACGCTTTTGATTATGAGCTGGTGAATACGGCCAAGAGAGACTTATTGATAAAGATCAATGTTTTGTGGCTGGGGTGA 1101 0.4251 MISASARNRSPFTATQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPKYIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSTSSTATSTTQTIPSYNRNLSLSNTNIPSASSFPFSPLPSSMSCDSQPFSQSYQNSSLNPFFYTQSTSSRPPDSDFPPQDATTHQLLMDSGSYSQDEKDYRNVHGIREGVDERAFFPEASGSARNYPDSYQQLSMSSYKSYSNSQFQNINDNPRQQEQHCFVLGTDFKSTRPSKEKETTETTQRPLHHFFGEWPPKNTDSWLDLASNSRIPTGDDPMNDAFDYELVNTAKRDLLIKINVLWLG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3881g00005 366 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Gabi3881g00005 366 MobiDBLite consensus disorder prediction 119 143 - -
Gabi3881g00005 366 MobiDBLite consensus disorder prediction 183 206 - -
Gabi3881g00005 366 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3881g00005 366 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3881g00005 366 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3881g00005 366 MobiDBLite consensus disorder prediction 105 143 - -
Gabi3881g00005 366 Pfam WRC 79 121 IPR014977 -
Gabi3881g00005 366 PANTHER GROWTH-REGULATING FACTOR 5 10 325 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3881g00005 Gabi-Chr3881 51833 53300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3881g00005 9 315 GRF Transcription Factor Family AT3G13960 40.166 2.49e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gabi3881g00005 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3881g00005 - - aprc:113851425 566.229