Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00055 ATGGAGAAGCACCTCTTGAAGGATTTCGAGCTCGACCCCAAGAATCCCTCCGTCGAAGCTCTGCAGCGATGGAGATCCGCCGTTACTCTGGTCAAAAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGATAAGCGATCCCAGGCAGAGCAGATTAAGCAAGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACAAGCCATCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCAGATGATATTGCTTCTATTGTTCGTAGCCATGATTATAAGAACTTAAACAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGACAGTCTCTGTGGATGGAGGTGTCAGTGAAGAGAGTATAAATCGAAGACAACAGATTTATGGGGTCAACCGTTATACGGAGAAACCGTCTAGAACGTTCCTGATGTTTGTGTGGGATGCAATGCAGGACTTAACTCTGATTATTCTCATGGTTTGTGCAATAGTGTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCATCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGCAAATGAAGAAAAGCCTTTTCTTCTCTCGGGAACCAAAGTTCAGGACGGTCAGGGGGTGATGTTAGTTACAGCTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGAGGAGACGATGAGACCCCATTGCAGGTGAAATTGAATGGGGTTGCTACTATTATTGGTAAAATTGGTTTGGCTTTTGCCGTTCTGACGTTTTTGGTGTTGACAATAAGGTTTATGGTTGAAAAAGCGCTTAATGGTGAGTTTGGTAGTTGGTCTTCAAAGGATGCAATGAAGTTACTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGTATGGTAGTTAATAAAATTTGGATATGCGACAAAGCCACGCAGATGAAAGGTAATGAGACTGCAGACGAACTGAAAACAAAGATATCTGAAGGAGTTGTAAGCATCCTCTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACGACATTGGGAACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTTGGTGCTGATTTTGATGCCCAGCGTAGAGCATATAAGATACTACAGGTTGAGCCGTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATTATTGATTGCAATGGAGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAATATATAGATGAAACCGAAGGGGAAATCAACATCCCTGATAGCGGCTATACTCTAATAGCCATAGTAGGAATTAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTTTAGCCGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATACATACAGCTATAGCTATAGCTAAAGAATGTGGTATACTTACGGAGGGTGGTGTAGCCATAGAAGGACCAGATTTTCGTGACTTGTCTCCGGAGCAAATGAAGGATATCATTCCAAGAATCCAGGTGATGGCACGATCCTTACCGCTTGACAAACATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGATATCGGACTTGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCACGACTATTATCAATGTTGCCAAATGGGGACGGGCAGTGTATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTGAATGTTGTTGCTCTGATTATCAACTTTTTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGGAAGGGGAACAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTCAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTGATGAGTTCGAATCCAGGAAACAGCCTCTTTGCAATTATGCAAGGGTAA 2850 0.4221 MEKHLLKDFELDPKNPSVEALQRWRSAVTLVKNRRRRFRMVADLDKRSQAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKPSEEAREAGFGIHPDDIASIVRSHDYKNLNNIGGVEAIARKLTVSVDGGVSEESINRRQQIYGVNRYTEKPSRTFLMFVWDAMQDLTLIILMVCAIVSIGVGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVIRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNANEEKPFLLSGTKVQDGQGVMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFMVEKALNGEFGSWSSKDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICDKATQMKGNETADELKTKISEGVVSILLQAIFQNTSAEVVKDKDGNNTTLGTPTESALLEFGLLFGADFDAQRRAYKILQVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKMCDKIIDCNGEVVDLPEDRANNVSDVINGFASEALRTLCLAVKYIDETEGEINIPDSGYTLIAIVGIKDPVRPGVKEAVQTCLAAGITVRMVTGDNIHTAIAIAKECGILTEGGVAIEGPDFRDLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKEKADVVIMDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALIINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVGRGTSFITKPMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNSFVFCQVMSSNPGNSLFAIMQG 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00055 949 Gene3D - 460 655 IPR023299 GO:0000166
Gabi3878g00055 949 PANTHER CATION TRANSPORTING ATPASE 86 935 - -
Gabi3878g00055 949 SFLD p-type atpase 432 803 IPR044492 -
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 460 655 - -
Gabi3878g00055 949 Pfam E1-E2 ATPase 235 428 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Gabi3878g00055 949 PRINTS P-type cation-transporting ATPase superfamily signature 775 787 - -
Gabi3878g00055 949 SMART Cation_ATPase_N_a_2 112 187 IPR004014 -
Gabi3878g00055 949 Gene3D - 447 796 IPR023214 -
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 16 76 - -
Gabi3878g00055 949 Gene3D - 165 898 - -
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 212 333 - -
Gabi3878g00055 949 CDD P-type_ATPase_Ca_PMCA-like 139 884 - -
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 165 222 - -
Gabi3878g00055 949 SFLD Haloacid Dehalogenase 432 803 - -
Gabi3878g00055 949 Pfam Cation transport ATPase (P-type) 504 590 - -
Gabi3878g00055 949 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 PRINTS H+-transporting ATPase (proton pump) signature 783 808 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 PRINTS H+-transporting ATPase (proton pump) signature 751 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 768 942 - -
Gabi3878g00055 949 SUPERFAMILY HAD-like 449 856 IPR036412 -
Gabi3878g00055 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 936 IPR023298 -
Gabi3878g00055 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Gabi3878g00055 949 Gene3D - 133 333 - -
Gabi3878g00055 949 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Gabi3878g00055 949 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Gabi3878g00055 949 FunFam Calcium-transporting ATPase 648 796 - -
Gabi3878g00055 949 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 935 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi3878g00055 949 Pfam Cation transporting ATPase, C-terminus 836 935 IPR006068 -
Gabi3878g00055 949 NCBIfam HAD-IC family P-type ATPase 716 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 NCBIfam HAD-IC family P-type ATPase 391 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 NCBIfam HAD-IC family P-type ATPase 544 696 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 NCBIfam HAD-IC family P-type ATPase 202 372 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00055 949 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 660 IPR023299 GO:0000166
Gabi3878g00055 949 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Gabi3878g00055 949 Gene3D - 16 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00055 Gabi-Chr3878 612312 620638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00055 59 936 Primary Pumps ATPases AT3G57330 73.918 0.0 1339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00055 K01537 - gmx:100783489 1615.13