Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00053 ATGGAGAAGCACCTCTTGAAGGATTTCGAGCTCGACCCCAAGAATCCCTCCGTCGAAGCTCTGCAGCGATGGAGATCCGCCGTTACTCTGGTCAAAAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGATAAGCGATCCCAGGCAGAGCAGATTAAGCAAGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGGTATGGCGCTCAAAGTTGAATACAAGCCATCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCAGATGATATTGCTTCTATTGTTCGTAGCCATGATTATAAGAACTTAAACAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGACAGTCTCTGTGGATGGAGGTGTCAGTGAAGAGAGTATAAATCGAAGACAACAGATTTATGGGGTCAACCGTTATACGGAGAAACCGTCTAGAACGTTCCTGATGTTTGTGTGGGATGCAATGCAGGACTTAACTCTGATTATTCTCATGGTTTGTGCAATAGTGTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCATCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGCAAATGAAGAAAAGCCTTTTCTTCTCTCGGGAACCAAAGTTCAGGACGGTCAGGGGGTGATGTTAGTTACAGCTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGAGGAGACGATGAGACCCCATTGCAGGTGAAATTGAATGGGGTTGCTACTATTATTGGTAAAATTGGTTTGGCTTTTGCCGTTCTGACGTTTTTGGTGTTGACAATAAGGTTTATGGTTGAAAAAGCGCTTAATGGTGAGTTTGGTAGTTGGTCTTCAAAGGATGCAATGAAGTTACTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGTATGGTAGTTAATAAAATTTGGATATGCGACAAAGCCACGCAGATGAAAGGTAATGAGACTGCAGACGAACTGAAAACAAAGATATCTGAAGGAGTTGTAAGCATCCTCTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACGACATTGGGAACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTTGGTGCTGATTTTGATGCCCAGCGTAGAGCATATAAGATACTACAGGTTGAGCCGTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATTATTGATTGCAATGGAGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGGTGGTGTAGCCATAGAAGGACCAGATTTTCGTGACTTGTCTCCGGAGCAAATGAAGGATATCATTCCAAGAATCCAGGTGATGGCACGATCCTTACCGCTTGACAAACATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGATATCGGACTTGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCACGACTATTATCAATGTTGCCAAATGGGGACGGGCAGTGTATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTGAATGTTGTTGCTCTGATTATCAACTTTTTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGGAAGGGGAACAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTCAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTCTTTAATGAAATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATTTTTTTGTTGATAATATTTGCCACTGTGGTATTTCAAGTGGTCATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAAATGTGGTTACTCAGTGTCTTAATTGGAGCTGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACGAGTAAGCACCATGATGGTTATGAGCCACTGCCTTCTGGTCCCGAGCTGGCGTAA 2892 0.4222 MEKHLLKDFELDPKNPSVEALQRWRSAVTLVKNRRRRFRMVADLDKRSQAEQIKQGIKEKIRIALYVQKAALQFIDGMALKVEYKPSEEAREAGFGIHPDDIASIVRSHDYKNLNNIGGVEAIARKLTVSVDGGVSEESINRRQQIYGVNRYTEKPSRTFLMFVWDAMQDLTLIILMVCAIVSIGVGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVIRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNANEEKPFLLSGTKVQDGQGVMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFMVEKALNGEFGSWSSKDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICDKATQMKGNETADELKTKISEGVVSILLQAIFQNTSAEVVKDKDGNNTTLGTPTESALLEFGLLFGADFDAQRRAYKILQVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKMCDKIIDCNGEVVDLPEDRANNVSDVINGFASEALRTLCLAGGVAIEGPDFRDLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKEKADVVIMDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALIINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVGRGTSFITKPMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFATVVFQVVIVEFLGAFASTVPLNWQMWLLSVLIGAVSMPIAAILKCIPVEKDTSKHHDGYEPLPSGPELA 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00053 963 FunFam Calcium-transporting ATPase 698 944 - -
Gabi3878g00053 963 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Gabi3878g00053 963 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Gabi3878g00053 963 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Gabi3878g00053 963 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Gabi3878g00053 963 FunFam Calcium-transporting ATPase 16 76 - -
Gabi3878g00053 963 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Gabi3878g00053 963 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Gabi3878g00053 963 Gene3D - 693 942 - -
Gabi3878g00053 963 FunFam Calcium-transporting ATPase 213 334 - -
Gabi3878g00053 963 Pfam E1-E2 ATPase 236 429 - -
Gabi3878g00053 963 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Gabi3878g00053 963 FunFam Calcium-transporting ATPase 166 223 - -
Gabi3878g00053 963 Gene3D - 212 308 - -
Gabi3878g00053 963 PANTHER CATION TRANSPORTING ATPASE 88 627 - -
Gabi3878g00053 963 SMART Cation_ATPase_N_a_2 113 188 IPR004014 -
Gabi3878g00053 963 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 627 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi3878g00053 963 Gene3D - 464 650 IPR023299 GO:0000166
Gabi3878g00053 963 Gene3D - 309 463 - -
Gabi3878g00053 963 Pfam Cation transporting ATPase, C-terminus 766 939 IPR006068 -
Gabi3878g00053 963 Pfam Cation transporter/ATPase, N-terminus 118 183 IPR004014 -
Gabi3878g00053 963 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
Gabi3878g00053 963 PRINTS Sodium/potassium-transporting ATPase signature 201 221 - -
Gabi3878g00053 963 PRINTS Sodium/potassium-transporting ATPase signature 444 465 - -
Gabi3878g00053 963 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 629 IPR023299 GO:0000166
Gabi3878g00053 963 Pfam Cation transport ATPase (P-type) 505 591 - -
Gabi3878g00053 963 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 942 IPR023298 -
Gabi3878g00053 963 Gene3D - 16 76 - -
Gabi3878g00053 963 SUPERFAMILY HAD-like 630 728 IPR036412 -
Gabi3878g00053 963 NCBIfam HAD-IC family P-type ATPase 203 373 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00053 963 NCBIfam HAD-IC family P-type ATPase 392 486 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00053 963 NCBIfam HAD-IC family P-type ATPase 646 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00053 Gabi-Chr3878 611764 620638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00053 627 960 Primary Pumps ATPases AT3G57330 79.940 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00053 K01537 - csv:101206199 1201.04