Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00051 ATGGAGAAGCACCTCTTGAAGGATTTCGAGCTCGACCCCAAGAATCCCTCCGTCGAAGCTCTGCAGCGATGGAGATCCGCCGTTACTCTGGTCAAAAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGATAAGCGATCCCAGGCAGAGCAGATTAAGCAAGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGGTATGGCGCTTCGAGTTGAATACAAGCCATCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCAGATGATATTGCTTCTATTGTTCGTAGCCATGATTATAAGAACTTAAACAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGACAGTCTCTGTGGATGGAGGTGTCAGTGAAGAGAGTATAAATCGAAGACAACAGATTTATGGGGTCAACCGTTATACGGAGAAACCGTCTAGAACGTTCCTGATGTTTGTGTGGGATGCAATGCAGGACTTAACTCTGATTATTCTCATGGTTTGTGCAATAGTGTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCATCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGCAAATGAAGAAAAGCCTTTTCTTCTCTCGGGAACCAAAGTTCAGGACGGTCAGGGGGTGATGTTAGTTACAGCTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGAGGAGACGATGAGACCCCATTGCAGGTGAAATTGAATGGGGTTGCTACTATTATTGGTAAAATTGGTTTGGCTTTTGCCGTTCTGACGTTTTTGGTGTTGACAATAAGGTTTATGGTTGAAAAAGCGCTTAATGGTGAGTTTGGTAGTTGGTCTTCAAAGGATGCAATGAAGTTACTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGTATGGTAGTTAATAAAATTTGGATATGCGACAAAGCCACGCAGATGAAAGGTAATGAGACTGCAGACGAACTGAAAACAAAGATATCTGAAGGAGTTGTAAGCATCCTCTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACGACATTGGGAACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTTGGTGCTGATTTTGATGCCCAGCGTAGAGCATATAAGATACTACAGGTTGAGCCGTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATTATTGATTGCAATGGAGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAATATATAGATGAAACCGAAGGGGAAATCAACATCCCTGATAGCGGCTATACTCTAATAGCCATAGTAGGAATTAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTTTAGCCGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATACATACAGCTATAGCTATAGCTAAAGAATGTGGTATACTTACGGAGGGTGGTGTAGCCATAGAAGGACCAGATTTTCGTGACTTGTCTCCGGAGCAAATGAAGGATATCATTCCAAGAATCCAGGTGATGGCACGATCCTTACCGCTTGACAAACATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGATATCGGACTTGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCACGACTATTATCAATGTTGCCAAATGGGGACGGGCAGTGTATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTGAATGTTGTTGCTCTGATTATCAACTTTTTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGGAAGGGGAACAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTCAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTCTTTAATGAAATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATTTTTTTGTTGATAATATTTGCCACTGTGGTATTTCAAGTGGTCATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAAATGTGGTTACTCAGTGTCTTAATTGGAGCTGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACGAGTAAGCACCATGATGGTTATGAGCCACTGCCTTCTGGTCCCGAGCTGGCGTAA 3105 0.4225 MEKHLLKDFELDPKNPSVEALQRWRSAVTLVKNRRRRFRMVADLDKRSQAEQIKQGIKEKIRIALYVQKAALQFIDGMALRVEYKPSEEAREAGFGIHPDDIASIVRSHDYKNLNNIGGVEAIARKLTVSVDGGVSEESINRRQQIYGVNRYTEKPSRTFLMFVWDAMQDLTLIILMVCAIVSIGVGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVIRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNANEEKPFLLSGTKVQDGQGVMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFMVEKALNGEFGSWSSKDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICDKATQMKGNETADELKTKISEGVVSILLQAIFQNTSAEVVKDKDGNNTTLGTPTESALLEFGLLFGADFDAQRRAYKILQVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKMCDKIIDCNGEVVDLPEDRANNVSDVINGFASEALRTLCLAVKYIDETEGEINIPDSGYTLIAIVGIKDPVRPGVKEAVQTCLAAGITVRMVTGDNIHTAIAIAKECGILTEGGVAIEGPDFRDLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKEKADVVIMDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALIINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVGRGTSFITKPMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFATVVFQVVIVEFLGAFASTVPLNWQMWLLSVLIGAVSMPIAAILKCIPVEKDTSKHHDGYEPLPSGPELA 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00051 1034 Gene3D - 461 656 IPR023299 GO:0000166
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 461 656 - -
Gabi3878g00051 1034 Gene3D - 448 797 IPR023214 -
Gabi3878g00051 1034 Gene3D - 166 1011 - -
Gabi3878g00051 1034 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1013 IPR023298 -
Gabi3878g00051 1034 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Gabi3878g00051 1034 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 213 334 - -
Gabi3878g00051 1034 SUPERFAMILY HAD-like 450 857 IPR036412 -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Gabi3878g00051 1034 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Gabi3878g00051 1034 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi3878g00051 1034 Pfam Cation transporter/ATPase, N-terminus 118 183 IPR004014 -
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 16 76 - -
Gabi3878g00051 1034 PANTHER CATION TRANSPORTING ATPASE 87 1013 - -
Gabi3878g00051 1034 Gene3D - 134 334 - -
Gabi3878g00051 1034 SMART Cation_ATPase_N_a_2 113 188 IPR004014 -
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 649 797 - -
Gabi3878g00051 1034 SFLD p-type atpase 433 804 IPR044492 -
Gabi3878g00051 1034 Pfam E1-E2 ATPase 236 429 - -
Gabi3878g00051 1034 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Gabi3878g00051 1034 Gene3D - 16 76 - -
Gabi3878g00051 1034 CDD P-type_ATPase_Ca_PMCA-like 140 885 - -
Gabi3878g00051 1034 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Gabi3878g00051 1034 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Gabi3878g00051 1034 SFLD C1.7: P-type atpase like 433 804 - -
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 769 1015 - -
Gabi3878g00051 1034 FunFam Calcium-transporting ATPase 166 223 - -
Gabi3878g00051 1034 NCBIfam HAD-IC family P-type ATPase 392 486 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 NCBIfam HAD-IC family P-type ATPase 717 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 NCBIfam HAD-IC family P-type ATPase 203 373 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 NCBIfam HAD-IC family P-type ATPase 545 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3878g00051 1034 Pfam Cation transport ATPase (P-type) 505 591 - -
Gabi3878g00051 1034 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00051 Gabi-Chr3878 611764 620638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00051 57 1031 Primary Pumps ATPases AT3G57330 73.436 0.0 1477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00051 K01537 - gmx:100783489 1776.91