Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3878g00050 | ATGGAGAAGCACCTCTTGAAGGATTTCGAGCTCGACCCCAAGAATCCCTCCGTCGAAGCTCTGCAGCGATGGAGATCCGCCGTTACTCTGGTCAAAAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGATAAGCGATCCCAGGCAGAGCAGATTAAGCAAGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGGTATGGCGCCTGGTAATCGAGTTGAATACAAGCCATCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCAGATGATATTGCTTCTATTGTTCGTAGCCATGATTATAAGAACTTAAACAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGACAGTCTCTGTGGATGGAGGTGTCAGTGAAGAGAGTATAAATCGAAGACAACAGATTTATGGGGTCAACCGTTATACGGAGAAACCGTCTAGAACGTTCCTGATGTTTGTGTGGGATGCAATGCAGGACTTAACTCTGATTATTCTCATGGTTTGTGCAATAGTGTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCATCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGCAAATGAAGAAAAGCCTTTTCTTCTCTCGGGAACCAAAGTTCAGGACGGTCAGGGGGTGATGTTAGTTACAGCTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGAGGAGACGATGAGACCCCATTGCAGGTGAAATTGAATGGGGTTGCTACTATTATTGGTAAAATTGGTTTGGCTTTTGCCGTTCTGACGTTTTTGGTGTTGACAATAAGGTTTATGGTTGAAAAAGCGCTTAATGGTGAGTTTGGTAGTTGGTCTTCAAAGGATGCAATGAAGTTACTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGTATGGTAGTTAATAAAATTTGGATATGCGACAAAGCCACGCAGATGAAAGGTAATGAGACTGCAGACGAACTGAAAACAAAGATATCTGAAGGAGTTGTAAGCATCCTCTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACGACATTGGGAACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTTGGTGCTGATTTTGATGCCCAGCGTAGAGCATATAAGATACTACAGGTTGAGCCGTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATTATTGATTGCAATGGAGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAATATATAGATGAAACCGAAGGGGAAATCAACATCCCTGATAGCGGCTATACTCTAATAGCCATAGTAGGAATTAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTTTAGCCGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATACATACAGCTATAGCTATAGCTAAAGAATGTGGTATACTTACGGAGGGTGGTGTAGCCATAGAAGGACCAGATTTTCGTGACTTGTCTCCGGAGCAAATGAAGGATATCATTCCAAGAATCCAGGTGATGGCACGATCCTTACCGCTTGACAAACATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGATATCGGACTTGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCACGACTATTATCAATGTTGCCAAATGGGGACGGGCAGTGTATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTGAATGTTGTTGCTCTGATTATCAACTTTTTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGGAAGGGGAACAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTCAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTCTTTAATGAAATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATTTTTTTGTTGATAATATTTGCCACTGTGGTATTTCAAGTGGTCATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAAATGTGGTTACTCAGTGTCTTAATTGGAGCTGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACGAGTAAGCACCATGATGGTTATGAGCCACTGCCTTCTGGTCCCGAGCTGGCGTAA | 3111 | 0.4227 | MEKHLLKDFELDPKNPSVEALQRWRSAVTLVKNRRRRFRMVADLDKRSQAEQIKQGIKEKIRIALYVQKAALQFIDGMAPGNRVEYKPSEEAREAGFGIHPDDIASIVRSHDYKNLNNIGGVEAIARKLTVSVDGGVSEESINRRQQIYGVNRYTEKPSRTFLMFVWDAMQDLTLIILMVCAIVSIGVGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVIRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNANEEKPFLLSGTKVQDGQGVMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFMVEKALNGEFGSWSSKDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICDKATQMKGNETADELKTKISEGVVSILLQAIFQNTSAEVVKDKDGNNTTLGTPTESALLEFGLLFGADFDAQRRAYKILQVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKMCDKIIDCNGEVVDLPEDRANNVSDVINGFASEALRTLCLAVKYIDETEGEINIPDSGYTLIAIVGIKDPVRPGVKEAVQTCLAAGITVRMVTGDNIHTAIAIAKECGILTEGGVAIEGPDFRDLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKEKADVVIMDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALIINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVGRGTSFITKPMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFATVVFQVVIVEFLGAFASTVPLNWQMWLLSVLIGAVSMPIAAILKCIPVEKDTSKHHDGYEPLPSGPELA | 1036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3878g00050 | 1036 | Gene3D | - | 136 | 336 | - | - | |
| Gabi3878g00050 | 1036 | Pfam | E1-E2 ATPase | 238 | 431 | - | - | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 651 | 799 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 786 | 811 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 611 | 629 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 754 | 770 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 459 | 663 | IPR023299 | GO:0000166 | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 771 | 1017 | - | - | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 168 | 225 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 651 | 662 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 453 | 467 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 673 | 683 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 773 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 284 | 298 | - | - | |
| Gabi3878g00050 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 778 | 790 | - | - | |
| Gabi3878g00050 | 1036 | Pfam | Cation transporting ATPase, C-terminus | 839 | 1012 | IPR006068 | - | |
| Gabi3878g00050 | 1036 | SUPERFAMILY | HAD-like | 452 | 859 | IPR036412 | - | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 215 | 336 | - | - | |
| Gabi3878g00050 | 1036 | Pfam | Cation transporter/ATPase, N-terminus | 120 | 185 | IPR004014 | - | |
| Gabi3878g00050 | 1036 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 455 | 461 | IPR018303 | - | |
| Gabi3878g00050 | 1036 | Gene3D | - | 168 | 1013 | - | - | |
| Gabi3878g00050 | 1036 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 49 | IPR024750 | GO:0005516 | |
| Gabi3878g00050 | 1036 | Gene3D | - | 450 | 799 | IPR023214 | - | |
| Gabi3878g00050 | 1036 | Pfam | Cation transport ATPase (P-type) | 507 | 593 | - | - | |
| Gabi3878g00050 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 547 | 699 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 394 | 488 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 205 | 375 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 719 | 841 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00050 | 1036 | Gene3D | - | 16 | 76 | - | - | |
| Gabi3878g00050 | 1036 | PANTHER | CATION TRANSPORTING ATPASE | 89 | 1015 | - | - | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 463 | 658 | - | - | |
| Gabi3878g00050 | 1036 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 113 | 1016 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Gabi3878g00050 | 1036 | FunFam | Calcium-transporting ATPase | 16 | 76 | - | - | |
| Gabi3878g00050 | 1036 | SFLD | Haloacid Dehalogenase | 435 | 806 | - | - | |
| Gabi3878g00050 | 1036 | SMART | Cation_ATPase_N_a_2 | 115 | 190 | IPR004014 | - | |
| Gabi3878g00050 | 1036 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 120 | 1015 | IPR023298 | - | |
| Gabi3878g00050 | 1036 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 887 | - | - | |
| Gabi3878g00050 | 1036 | Gene3D | - | 463 | 658 | IPR023299 | GO:0000166 | |
| Gabi3878g00050 | 1036 | SFLD | p-type atpase | 435 | 806 | IPR044492 | - | |
| Gabi3878g00050 | 1036 | SUPERFAMILY | Calcium ATPase, transduction domain A | 238 | 334 | IPR008250 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3878g00050 | Gabi-Chr3878 | 611764 | 620638 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3878g00050 | 57 | 1033 | Primary Pumps ATPases | AT3G57330 | 73.286 | 0.0 | 1477 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3878g00050 | K01537 | - | gmx:100783489 | 1781.92 |