Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3878g00049 | ATGGAGAAGCACCTCTTGAAGGATTTCGAGCTCGACCCCAAGAATCCCTCCGTCGAAGCTCTGCAGCGATGGAGATCCGCCGTTACTCTGGTCAAAAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGATAAGCGATCCCAGGCAGAGCAGATTAAGCAAGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACAAGCCATCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCAGATGATATTGCTTCTATTGTTCGTAGCCATGATTATAAGAACTTAAACAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGACAGTCTCTGTGGATGGAGGTGTCAGTGAAGAGAGTATAAATCGAAGACAACAGATTTATGGGGTCAACCGTTATACGGAGAAACCGTCTAGAACGTTCCTGATGTTTGTGTGGGATGCAATGCAGGACTTAACTCTGATTATTCTCATGGTTTGTGCAATAGTGTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTTAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCATCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGCAAATGAAGAAAAGCCTTTTCTTCTCTCGGGAACCAAAGTTCAGGACGGTCAGGGGGTGATGTTAGTTACAGCTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGAGGAGACGATGAGACCCCATTGCAGGTGAAATTGAATGGGGTTGCTACTATTATTGGTAAAATTGGTTTGGCTTTTGCCGTTCTGACGTTTTTGGTGTTGACAATAAGGTTTATGGTTGAAAAAGCGCTTAATGGTGAGTTTGGTAGTTGGTCTTCAAAGGATGCAATGAAGTTACTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGTATGGTAGTTAATAAAATTTGGATATGCGACAAAGCCACGCAGATGAAAGGTAATGAGACTGCAGACGAACTGAAAACAAAGATATCTGAAGGAGTTGTAAGCATCCTCTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACGACATTGGGAACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTTGGTGCTGATTTTGATGCCCAGCGTAGAGCATATAAGATACTACAGGTTGAGCCGTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTAAAAATGTGTGACAAAATTATTGATTGCAATGGAGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAATATATAGATGAAACCGAAGGGGAAATCAACATCCCTGATAGCGGCTATACTCTAATAGCCATAGTAGGAATTAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTTTAGCCGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATACATACAGCTATAGCTATAGCTAAAGAATGTGGTATACTTACGGAGGGTGGTGTAGCCATAGAAGGACCAGATTTTCGTGACTTGTCTCCGGAGCAAATGAAGGATATCATTCCAAGAATCCAGGTGATGGCACGATCCTTACCGCTTGACAAACATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGATATCGGACTTGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCACGACTATTATCAATGTTGCCAAATGGGGACGGGCAGTGTATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTGAATGTTGTTGCTCTGATTATCAACTTTTTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGGAAGGGGAACAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTCAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTCTTTAATGAAATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATTTTTTTGTTGATAATATTTGCCACTGTGGTATTTCAAGTGGTCATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAAATGTGGTTACTCAGTGTCTTAATTGGAGCTGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACGAGTAAGCACCATGATGGTTATGAGCCACTGCCTTCTGGTCCCGAGCTGGCGTAA | 3102 | 0.422 | MEKHLLKDFELDPKNPSVEALQRWRSAVTLVKNRRRRFRMVADLDKRSQAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKPSEEAREAGFGIHPDDIASIVRSHDYKNLNNIGGVEAIARKLTVSVDGGVSEESINRRQQIYGVNRYTEKPSRTFLMFVWDAMQDLTLIILMVCAIVSIGVGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVIRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNANEEKPFLLSGTKVQDGQGVMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFMVEKALNGEFGSWSSKDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICDKATQMKGNETADELKTKISEGVVSILLQAIFQNTSAEVVKDKDGNNTTLGTPTESALLEFGLLFGADFDAQRRAYKILQVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKMCDKIIDCNGEVVDLPEDRANNVSDVINGFASEALRTLCLAVKYIDETEGEINIPDSGYTLIAIVGIKDPVRPGVKEAVQTCLAAGITVRMVTGDNIHTAIAIAKECGILTEGGVAIEGPDFRDLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKEKADVVIMDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALIINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVGRGTSFITKPMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFATVVFQVVIVEFLGAFASTVPLNWQMWLLSVLIGAVSMPIAAILKCIPVEKDTSKHHDGYEPLPSGPELA | 1033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 648 | 659 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 450 | 464 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 281 | 295 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 670 | 680 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 775 | 787 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 751 | 770 | - | - | |
| Gabi3878g00049 | 1033 | Pfam | E1-E2 ATPase | 235 | 428 | - | - | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 165 | 222 | - | - | |
| Gabi3878g00049 | 1033 | Pfam | Cation transporting ATPase, C-terminus | 836 | 1009 | IPR006068 | - | |
| Gabi3878g00049 | 1033 | SMART | Cation_ATPase_N_a_2 | 112 | 187 | IPR004014 | - | |
| Gabi3878g00049 | 1033 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 456 | 660 | IPR023299 | GO:0000166 | |
| Gabi3878g00049 | 1033 | SFLD | p-type atpase | 432 | 803 | IPR044492 | - | |
| Gabi3878g00049 | 1033 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 109 | 1013 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Gabi3878g00049 | 1033 | CDD | P-type_ATPase_Ca_PMCA-like | 139 | 884 | - | - | |
| Gabi3878g00049 | 1033 | Gene3D | - | 133 | 333 | - | - | |
| Gabi3878g00049 | 1033 | Gene3D | - | 165 | 1010 | - | - | |
| Gabi3878g00049 | 1033 | Gene3D | - | 447 | 796 | IPR023214 | - | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 212 | 333 | - | - | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 16 | 76 | - | - | |
| Gabi3878g00049 | 1033 | PANTHER | CATION TRANSPORTING ATPASE | 86 | 1012 | - | - | |
| Gabi3878g00049 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 783 | 808 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 608 | 626 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 751 | 767 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 460 | 655 | - | - | |
| Gabi3878g00049 | 1033 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 182 | IPR004014 | - | |
| Gabi3878g00049 | 1033 | Gene3D | - | 16 | 77 | - | - | |
| Gabi3878g00049 | 1033 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 452 | 458 | IPR018303 | - | |
| Gabi3878g00049 | 1033 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1012 | IPR023298 | - | |
| Gabi3878g00049 | 1033 | Gene3D | - | 460 | 655 | IPR023299 | GO:0000166 | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 768 | 1014 | - | - | |
| Gabi3878g00049 | 1033 | Pfam | Cation transport ATPase (P-type) | 504 | 590 | - | - | |
| Gabi3878g00049 | 1033 | FunFam | Calcium-transporting ATPase | 648 | 796 | - | - | |
| Gabi3878g00049 | 1033 | SUPERFAMILY | HAD-like | 449 | 856 | IPR036412 | - | |
| Gabi3878g00049 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 391 | 485 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 716 | 838 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 544 | 696 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 202 | 372 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi3878g00049 | 1033 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 49 | IPR024750 | GO:0005516 | |
| Gabi3878g00049 | 1033 | SFLD | C1.7: P-type atpase like | 432 | 803 | - | - | |
| Gabi3878g00049 | 1033 | SUPERFAMILY | Calcium ATPase, transduction domain A | 235 | 331 | IPR008250 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3878g00049 | Gabi-Chr3878 | 611764 | 620638 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3878g00049 | 57 | 1030 | Primary Pumps ATPases | AT3G57330 | 73.614 | 0.0 | 1484 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3878g00049 | K01537 | - | gmx:100783489 | 1788.85 |