Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00045 ATGGATCACAGAACGAAACCCAAGGAATCCCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGGTGAGAGCAGAGACAGCCAAGGTGGGACGATTGCAAATCACAGTAATGGGAATATGCGTGGGAGGGAGGTGAATTTGTTGAAGAAGAGGAGGGGGTCTCAAGATAGTGACAACGAGGAAAAGAGCAGTTTTAACGGGACACACATGACGGAGGAGCGATATCGATCAATGCTTGGAGAGCATATTAAGAAGTACAAGAGGAGGTTGAAGGACACCTCGACTAGTCCTGCACAAAATCAGGTTGCTGTTCCACTTGTCAAAAGTAACTCAGGATTAAAAGCTCGCAAGTCGGGGAATGAGCGCCGGGTAGGATTACGTGCTGCTGAGACTACATCTGAATGGATGAATGATTCCAATTCTCAGAAACCAGGAAACTATCGTGATGCAGATTTCACGCAGCAATATGGCGCTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGTATCACTTACAAGATTCCTCCAATTTATAATAAGTTGGCAGCAACACTGAATCTTCCAAGCTTCTCAGATATCCATGTGGAGGATTTTTACTTAAAGGGTACCTTAGATTTGGGCTCCTTGGCTGAAATGATGGCATCTGATAAAAGGTTTGGGAATAGAAACCGAGCCTGTATGGGGGAAACAATATCCCAATATGAATCACTTCAGGCACGACTAAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAGTTTCTGATGTTGGTTTGGATTCCTCCATTCCGGAGGGGGCAGCTGGAAGGATAAAGCGATCTATTTTGTCCGAGGGTGGTGTATTGCAGATTTATTATGTGAAGGTTTTGGAGAAAGGTGACGCCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAGAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATTTGGAAAGATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTTACTACTTTTCATCGAAAGCAGCTCATCGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTTAAAATAAAAGTTAGTAGATCGCTTAAGTGGGTGAAGACTGCGAGTATGCGCACCCGGAAACTAGCTAGGGACATGTTACTGCTCTGGAAACGAATAGATAAGGAGATGGCAGAAGTGAGGAAGAAAGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTCCGAGAAGCAAAGAGGCAACAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACATACCATCTTCAGAAGCTTTACCTACGGTTGATGAAAATACAAATGATCAAGATGCAGTAATCGACTCTTCAGATGCTGGGCCTAATGAGGAGGAAGATCTTGAAGAGGTTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTATCTAAGCAGAGAAGGTTGACAGATGCTTTTGATACTGAATGCTTGAGGCTGCGACTGGCTGGTGAAACTGATTCACTTCCATCAGAAGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCATCCACGGTTCGGACACCAGATTTATTTAAAGGTTGTCTCAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCCTCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCCGAACTGAAAAGACTTCCTTATTGGGGTGGGCTTCCAGACCGGGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTAACTGATGAGAAGTTTTTTCGGCGTGTGAAATGGCAATATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGCATAAGATGGAAGACACTCCTCAGTTTCAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATAATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGTGTCAAAAAAGATGTAATTTCTGAGTTGACTACAAAAACTGAGGTTACTGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTTCTGAGCTGTTTGATAGTAATCGAGGACAGCTCAATGAGAAGAGAATTCTAAATTTAATGAACATTGTTATTCAACTAAGGAAGGTGTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGATATTCCGAATTCCCTTCAACCTGCTCCATTTGGGGAGTTGGAAGACATATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATGCAAAGTTCTGAAACTCTCAGTCCAGCTGTTGGCAGTGGTGTCTGCAGAGAATCTTTTCAGAAATATTTTAATATTTTTAGACCACAAAATATCTATCGATCTGTCTTCTCAGAAGACATGCATGTTCAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCCAGAGGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCAACTATTATTTTCTATGATGAGATGGGAACGAAAATTCATGGATGAAGTTGTAGACTTTCTTACGGAGACCATAGATGATGATCCAGAATTTAGTAACCTTGAGAAAGGAAAAGTAAGAACTGTTACACGGATGTTATTGGTGCCATCTAGATCTGAGGCTAAGTTTCTTCAAAGAAGATTTCCAACTGGGCCTAGCCATGCTCCTTTTGAGGCCTTGGTTGTCTCGCATCGAGATAGGCTTTTATCAAATGCGAGGCTTCTGCACTCAGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCGCATTGCTCGGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACGTCTGATTGTAATGGACCTAGAAAGCCAGATTTTCCTCATCATTTAATACAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAATTAACGCACAGTATTTTTGGTTCTTCTCCGCCTACGCGGAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTAAAACGCTTGAGAGCAGGAAATCATCGTGTACTCTTGTTTGCTCAGATGACCAAGATGCTAAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCTACTATTCAGGATCGCAGAGACATGGTCAGGGACTTTCAGCATAGGGCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCCGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCTAGTCAGAAAAGTACTGTACAAAACCTCGTCATGACTGGTGGTTCTGTTGGTGGAGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTAAAGGATATCCCTCTACAGGTAAAGGATAAGCAAATGAAAAAACAACCTTCGAAGGGTATTTGGTTAAATGAAGAAGGTGATGCATCTCTGGAAGATCTAACAAACTCTGTAGCCCAGGGTACTCCAGATTATGATATTTCCAAGGACCCAGAGGGATCAAAATCCAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCAAACTTCTAGACCAAAGAATTATCAGAAGATGAGTGAATTGGGTACCACAGCTATGGACGACGAATTGGATGATGTCCACCTAAATACCGATTCAATGGGTCAGAAGCCCAAGAGACCAAAGAGGATAAAGAAGAGTGTGAATGAAAATTTTGATGAGGCTTTTACTCGGACAGATACCGTGGTCTCAGAGCAGACCCAATTTCCACCTCCGCGTGATTTCAGTGCTGGAGGTTCTAAAGCAGAATCAGGCCAAGACACCTGA 4605 0.415 MDHRTKPKESLSYSTLFNLESLMNFQLPEQDDDFDYYGNSSQGESRDSQGGTIANHSNGNMRGREVNLLKKRRGSQDSDNEEKSSFNGTHMTEERYRSMLGEHIKKYKRRLKDTSTSPAQNQVAVPLVKSNSGLKARKSGNERRVGLRAAETTSEWMNDSNSQKPGNYRDADFTQQYGADRIMYEPASLDIGDGITYKIPPIYNKLAATLNLPSFSDIHVEDFYLKGTLDLGSLAEMMASDKRFGNRNRACMGETISQYESLQARLKVMSASNSAHKFSLKVSDVGLDSSIPEGAAGRIKRSILSEGGVLQIYYVKVLEKGDAYEIIERSLPKKQKVEKDPALIEKEEMERFGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRFSENCQREVKIKVSRSLKWVKTASMRTRKLARDMLLLWKRIDKEMAEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNIPSSEALPTVDENTNDQDAVIDSSDAGPNEEEDLEEVELKKEALKAAQEAVSKQRRLTDAFDTECLRLRLAGETDSLPSEVAGASNIDLQTPSTMPVASTVRTPDLFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPSSVLNNWNEELERFCPELKRLPYWGGLPDRAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLSELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGDIPNSLQPAPFGELEDIYYSGGHNPISYEIPKLVYQEIMQSSETLSPAVGSGVCRESFQKYFNIFRPQNIYRSVFSEDMHVQSGNFGFTHLMDLSPPEVTFLATGSFMEQLLFSMMRWERKFMDEVVDFLTETIDDDPEFSNLEKGKVRTVTRMLLVPSRSEAKFLQRRFPTGPSHAPFEALVVSHRDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDCNGPRKPDFPHHLIQEIDSELPVSQPALQLTHSIFGSSPPTRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKDIPLQVKDKQMKKQPSKGIWLNEEGDASLEDLTNSVAQGTPDYDISKDPEGSKSSNKKRKAASDKQTSRPKNYQKMSELGTTAMDDELDDVHLNTDSMGQKPKRPKRIKKSVNENFDEAFTRTDTVVSEQTQFPPPRDFSAGGSKAESGQDT 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00045 1534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Gabi3878g00045 1534 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 1417 1534 - -
Gabi3878g00045 1534 Pfam Helicase conserved C-terminal domain 1208 1317 IPR001650 -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 153 170 - -
Gabi3878g00045 1534 PANTHER HELICASE SRCAP-RELATED 79 522 - -
Gabi3878g00045 1534 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Gabi3878g00045 1534 Coils Coil 427 466 - -
Gabi3878g00045 1534 Gene3D - 828 897 IPR027417 -
Gabi3878g00045 1534 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 130 170 - -
Gabi3878g00045 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1388 IPR027417 -
Gabi3878g00045 1534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1208 1392 IPR001650 -
Gabi3878g00045 1534 SMART ultradead3 586 781 IPR014001 -
Gabi3878g00045 1534 Gene3D - 587 827 IPR038718 -
Gabi3878g00045 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 495 514 - -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 1467 1484 - -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 1428 1448 - -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 35 62 - -
Gabi3878g00045 1534 FunFam DNA helicase INO80-like protein 1176 1428 - -
Gabi3878g00045 1534 FunFam Putative DNA helicase INO80 562 840 - -
Gabi3878g00045 1534 SMART helicmild6 1234 1317 IPR001650 -
Gabi3878g00045 1534 Coils Coil 513 533 - -
Gabi3878g00045 1534 CDD SF2_C_SNF 1196 1328 - -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 65 95 - -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 30 95 - -
Gabi3878g00045 1534 Gene3D - 1175 1418 IPR027417 -
Gabi3878g00045 1534 MobiDBLite consensus disorder prediction 1500 1519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00045 Gabi-Chr3878 536664 555653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00045 611 900 RAD5 or RAD16-like Gene Family AT5G43530 28.869 3.00e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3878g00045 SNF2_N 6.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00045 K11665 - gmx:100780615 2613.56