Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00038 ATGACAAGCCTAAAGTTGAAGGTCAATAGGGCGAAGCTCTCGGCATGCTTGACATGTCTTTTGTGTAACAAATGGTTCAGAAACGCCACCACTATATCAGAATGCTTGCATACTTTTTGCAGGGAATGCATAGATAAGAAGCTAATAGATGGGAAATTGAAGCACTGTCCAGTGTGCAATGCAGACTTGGGTTGTTCTCCACTGGATAAACTAAGACCAGATCACAGCCTGCAAGATTTGAGGGAGAAAATAGTCACCTCTGAAGGAAAAAATACTAAGGCACTTGACAATGTTCCTTCAGTTACATTGCTAACCAAAAGAAAGAAGAAATCTCTATCTTCGCTAAAAGCCAATGCAGGAAGAGCCAAAGCTGCTGCAAGAAAAGCTTTCACTCCACAAGAATCAGATTTTTCTGCTTCTAAACCTGATGAAGTGGCAGATGTTAAGAAAGATGATGAACTCTGTGAGATAGAAATTTTGGATGAAGTTTCTACAATTATATCTGCAAGAAGAGCAAAAGCTGCAGCAAGGAAAAAATTCATTCTAAGTGAATTAACTCCTACCAGTCAAGCTGACAAAGTAACGGGAGATGAAAAGAAAGATGATGATCATCCCATACTTGAAACTTTCAACGTGGCTTCCAAAACCAAAGTTCATAATTCTTCAAAATCAAATTCCAGTCAACAAATAGTGCCAGACAAGATTTCAGGCGACAATGCTGAGTTATGGGAAGAAAAGGCTGATATGTATGAGCCATTAAGTTCCCTGGTGGAAGCTGAAAGCAAAAACAAGTCTCGTAATAAGTCCACCATGCAAGAAAATCATGTGACTCCAGTGGCTGTGGACTCTAGTGGCAATGAGTCGACTCATCATCCAAAATCAGAATCCATCAAAGTTAAAAGGTTGCAGGGCACCCAAGAAAGAACAGCCAGAATCTCTGAGGACTTGAATGTTCCAGCACAATCTGTGATTGGTTCAAACAGTGAAAGCAACAATGAATTGTGTCCAATCTGGTTCTCTTTGGTTGCTTCTGAAGAGAACGAAGTGGGTGCACGATTGCCACAAATATCTTCCTGCTACCTAAGGGTTAAGGATGGTAATTTACCTGTTTCCTTTATCAAAAAGTATCTTGTGAAGAAGCTTAATCTTGCTAGCGAAGCTGAGGTGGAGATCTCATTACAAGGTCAGCCAGTTTTATCTTCACTGAAACTGCAGAACTTAGTTGACCTGTGGTTGGAAAGATTTCCAGCGAATGAGATGATTCAGACTTCTGTTGGAAACTCAGCTAAGGATTTTGTTATGGTCCTTTCATATGGTCGAAAGGCTTGA 1329 0.4041 MTSLKLKVNRAKLSACLTCLLCNKWFRNATTISECLHTFCRECIDKKLIDGKLKHCPVCNADLGCSPLDKLRPDHSLQDLREKIVTSEGKNTKALDNVPSVTLLTKRKKKSLSSLKANAGRAKAAARKAFTPQESDFSASKPDEVADVKKDDELCEIEILDEVSTIISARRAKAAARKKFILSELTPTSQADKVTGDEKKDDDHPILETFNVASKTKVHNSSKSNSSQQIVPDKISGDNAELWEEKADMYEPLSSLVEAESKNKSRNKSTMQENHVTPVAVDSSGNESTHHPKSESIKVKRLQGTQERTARISEDLNVPAQSVIGSNSESNNELCPIWFSLVASEENEVGARLPQISSCYLRVKDGNLPVSFIKKYLVKKLNLASEAEVEISLQGQPVLSSLKLQNLVDLWLERFPANEMIQTSVGNSAKDFVMVLSYGRKA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 214 235 - -
Gabi3878g00038 442 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 125 144 - -
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 270 287 - -
Gabi3878g00038 442 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 441 IPR044807 GO:0004842
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 259 304 - -
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 288 304 - -
Gabi3878g00038 442 SUPERFAMILY RING/U-box 15 85 - -
Gabi3878g00038 442 SMART ring_2 19 59 IPR001841 -
Gabi3878g00038 442 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Gabi3878g00038 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 118 IPR013083 -
Gabi3878g00038 442 MobiDBLite consensus disorder prediction 214 234 - -
Gabi3878g00038 442 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Gabi3878g00038 442 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00038 Gabi-Chr3878 474171 478170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00038 7 364 C3H Transcription Factor Family AT2G30580 31.649 6.88e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00038 K16277 - pop:7474161 335.495