Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3878g00032 | ATGGCAACTTTGTTGGGAAAGGAGAATGGTCTGAACCTGAAGGAGACTGAACTTTGTCTGGGTTTGCCTGGTGGTGGTGGAGGCGGCGGCGGCTGTGGCGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGTCACAGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAACCAAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTTAACAGTGAGGATGGTACTGAGAAGACAACAAGCAGCACTACATCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACTTGACAATGTACAAAAGCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGGTACGCATCATTTATTTAATTACATCAACTTTTTCATTTTGCTCATTAGATGGCTCATGGAAGTCATTATTATGAAACGCAATTACTAA | 789 | 0.4575 | MATLLGKENGLNLKETELCLGLPGGGGGGGGCGGGGGSEVETPRVTGKRGFSETVDLKLNLQPKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNSEDGTEKTTSSTTSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLGTHHLFNYINFFILLIRWLMEVIIMKRNY | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3878g00032 | 262 | Pfam | AUX/IAA family | 45 | 234 | IPR033389 | - | |
Gabi3878g00032 | 262 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | - | - | |
Gabi3878g00032 | 262 | FunFam | Auxin-responsive protein | 122 | 237 | - | - | |
Gabi3878g00032 | 262 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 11 | 232 | IPR003311 | GO:0005634|GO:0006355 | |
Gabi3878g00032 | 262 | Gene3D | - | 121 | 238 | - | - | |
Gabi3878g00032 | 262 | ProSiteProfiles | PB1 domain profile. | 127 | 227 | IPR000270 | GO:0005515 | |
Gabi3878g00032 | 262 | SUPERFAMILY | CAD & PB1 domains | 122 | 226 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3878g00032 | Gabi-Chr3878 | 414291 | 416164 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3878g00032 | 125 | 235 | B3 DNA Binding Superfamily | AT3G61830 | 33.333 | 3.46e-09 | 55.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Gabi3878g00032 | AUX_IAA | 5.1e-81 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3878g00032 | K14484 | - | gmx:100810762 | 387.882 |