Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00032 ATGGCAACTTTGTTGGGAAAGGAGAATGGTCTGAACCTGAAGGAGACTGAACTTTGTCTGGGTTTGCCTGGTGGTGGTGGAGGCGGCGGCGGCTGTGGCGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGTCACAGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAACCAAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTTAACAGTGAGGATGGTACTGAGAAGACAACAAGCAGCACTACATCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACTTGACAATGTACAAAAGCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGGTACGCATCATTTATTTAATTACATCAACTTTTTCATTTTGCTCATTAGATGGCTCATGGAAGTCATTATTATGAAACGCAATTACTAA 789 0.4575 MATLLGKENGLNLKETELCLGLPGGGGGGGGCGGGGGSEVETPRVTGKRGFSETVDLKLNLQPKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNSEDGTEKTTSSTTSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLGTHHLFNYINFFILLIRWLMEVIIMKRNY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00032 262 Pfam AUX/IAA family 45 234 IPR033389 -
Gabi3878g00032 262 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Gabi3878g00032 262 FunFam Auxin-responsive protein 122 237 - -
Gabi3878g00032 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 232 IPR003311 GO:0005634|GO:0006355
Gabi3878g00032 262 Gene3D - 121 238 - -
Gabi3878g00032 262 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Gabi3878g00032 262 SUPERFAMILY CAD & PB1 domains 122 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00032 Gabi-Chr3878 414291 416164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00032 125 235 B3 DNA Binding Superfamily AT3G61830 33.333 3.46e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3878g00032 AUX_IAA 5.1e-81 CL0072