Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00031 ATGGCAACTTTGTTGGGAAAGGAGAATGGTCTGAACCTGAAGGAGACTGAACTTTGTCTGGGTTTGCCTGGTGGTGGTGGAGGCGGCGGCGGCTGTGGCGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGTCACAGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAACCAAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTTAACAGTGAGGATGGTACTGAGAAGACAACAAGCAGCACTACATCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACTTGACAATGTACAAAAGCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGA 738 0.4783 MATLLGKENGLNLKETELCLGLPGGGGGGGGCGGGGGSEVETPRVTGKRGFSETVDLKLNLQPKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNSEDGTEKTTSSTTSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00031 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 232 IPR003311 GO:0005634|GO:0006355
Gabi3878g00031 245 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Gabi3878g00031 245 MobiDBLite consensus disorder prediction 23 49 - -
Gabi3878g00031 245 SUPERFAMILY CAD & PB1 domains 122 226 - -
Gabi3878g00031 245 Gene3D - 121 239 - -
Gabi3878g00031 245 Pfam AUX/IAA family 45 236 IPR033389 -
Gabi3878g00031 245 FunFam Auxin-responsive protein 122 237 - -
Gabi3878g00031 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00031 Gabi-Chr3878 414291 416568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00031 125 230 B3 DNA Binding Superfamily AT3G61830 33.962 2.52e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3878g00031 AUX_IAA 6.2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00031 K14484 - gmx:100810762 411.764