Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00030 ATGGAAAGCACGGTGACATATGAGAATGATCTCAACTTCAAGGCAACAGAGCTTAGATTGGGGCTGCCAGGGACAGAGGAAAAAACAGTGGCTGGTGTTAGAACCAACAAAAGGCCATTGATTGAAACTTCTAAGGAGTGTGGTTCTAAGGGCTCTAATGCTCAACATGTGGACAGTGATTCAACCCCTCCTAGCAAGGCAAAAATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAATAGCTTGCAAGAGGCTAAGGCTGAGGTTGCTGGGATTTATGTTAAAGTAAGCATGGATGGAGCACCTTACCTCAGAAAGATAGATTTGAGGGTCTATGTTGGCTATACAGAACTCCTTAAAGCTCTTGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAGGAAGGTTACAAGGGATCTGATTATGCACCTACGTATGAAGACAAGGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGACTAAGAATAATGAAAGGATCAGAAGCCAGAGGTTTGGGTTGTGGTGTATGA 570 0.4333 MESTVTYENDLNFKATELRLGLPGTEEKTVAGVRTNKRPLIETSKECGSKGSNAQHVDSDSTPPSKAKIVGWPPIRSYRKNSLQEAKAEVAGIYVKVSMDGAPYLRKIDLRVYVGYTELLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00030 189 SUPERFAMILY CAD & PB1 domains 92 178 - -
Gabi3878g00030 189 Pfam AUX/IAA family 49 186 IPR033389 -
Gabi3878g00030 189 MobiDBLite consensus disorder prediction 44 66 - -
Gabi3878g00030 189 FunFam Auxin-responsive protein 87 189 - -
Gabi3878g00030 189 ProSiteProfiles PB1 domain profile. 92 179 IPR000270 GO:0005515
Gabi3878g00030 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 183 IPR003311 GO:0005634|GO:0006355
Gabi3878g00030 189 MobiDBLite consensus disorder prediction 46 62 - -
Gabi3878g00030 189 Gene3D - 86 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00030 Gabi-Chr3878 374277 375797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00030 81 185 B3 DNA Binding Superfamily AT2G46530 36.792 8.04e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3878g00030 AUX_IAA 2.2e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00030 K14484 - qsa:O6P43_021494 311.227