Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00025 ATGGAACCGTCATTGCAACATCCACCACAACCGCCACCTCCTCCTCCGCCGCGCTCCGCCACCATTCTCGGAAAGTACCAACTGACCCGGCTCCTCGGCCGCGGCAGCTTCGCCAAGGTCTACCAAGCCCGCTCCCTAATCGACGGCGCCACCGTCGCCGTCAAGATCATCGACAAGTCAAAGACCGTCGACGCTGCCATGGAGCCCCGAATCATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAGAATCCAGGAGGTCATGGCCACAAAGACCAAGATCCACCTCGTCGTCGAGTTCGCCGCCGGCGGCGAGCTCTTCTCCAAAATCTCACGCCGCGGCCGTCTTCCAGAGGCCACGGCGCGCCGCTACTTTCAGCAGCTCGTCTCCGCGCTCCGCTTCTGCCACCGCAACGGCGTGGCCCACCGCGACCTCAAGCCGCAGAATCTCCTCCTCGACGCCGACGGCAACCTCAAGGTCTCTGACTTTGGGCTCTCCGCGCTGCCGGAGCATCACCAGGACGGCCTTCTCCACACCGCCTGTGGCACGCCGGCGTACACTGCGCCGGAGATTCTCCGCCGTAGCGGCGGCTACGACGGGTCCAAAGCGGACGCGTGGTCGTGCGGCCTCATTCTCTACGTTCTCCTTGCCGGTCACCTCCCGTTCGACGATTCGAATATTCCGGCGATGTGCAAGAAGATCTCCCGGCGAGATTACCGGTTCCCGGAGTGTATTTCGAAGCCGGCCCGTTTTGTGATCCACAAGTTACTCGACCCGAATCCGGAGACCCGAATGAGCGTGGAGGGTCTGTTTGGGAACGCGTGGTTTAAAAAATCACTGAGAGTTGAAGCAGAAGAGAGAGTGTTTGGATGGGATGTTTATGGGAAGGGTTACGAAGGGAAGGGTTCGAGTGTGAACGCGTTTGATATAATATCGATGTCTTCGGGTTTGGATTTAAGGGGGTTGTTTGAAACGACGTCGAATAGGAGGGAGAAGATGTTCACGTCAAGTGCAAAGGTGGAGGTAGTGGAAGAGAAGGTGAAAGAGGTTGGAGGGGTTTTGGGGTTTAAGGTTGAGATAGGGAAGAAGAATAGTGCAATTGGTTTGGTGAAAGGGAAGGTGGCTTTGGTGTTTGAGATGTTTGAGATTGTGCCTGCTCAGCTGCTTTTGGTGGCTTTCACGGTGGTGGAGGGTGGTTTGGAGTTTGAGGAACATCATTGGGGGGATTGGAAAGATGCCTTGCAAGATCTCGTGCTTTCTTGGCACAACAATGAATCATGA 1299 0.5704 MEPSLQHPPQPPPPPPPRSATILGKYQLTRLLGRGSFAKVYQARSLIDGATVAVKIIDKSKTVDAAMEPRIIREIDAMRRLHHHPNILRIQEVMATKTKIHLVVEFAAGGELFSKISRRGRLPEATARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHHQDGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVLLAGHLPFDDSNIPAMCKKISRRDYRFPECISKPARFVIHKLLDPNPETRMSVEGLFGNAWFKKSLRVEAEERVFGWDVYGKGYEGKGSSVNAFDIISMSSGLDLRGLFETTSNRREKMFTSSAKVEVVEEKVKEVGGVLGFKVEIGKKNSAIGLVKGKVALVFEMFEIVPAQLLLVAFTVVEGGLEFEEHHWGDWKDALQDLVLSWHNNES 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00025 432 SUPERFAMILY Protein kinase-like (PK-like) 22 288 IPR011009 -
Gabi3878g00025 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gabi3878g00025 432 Pfam NAF domain 309 365 IPR004041 GO:0007165
Gabi3878g00025 432 Gene3D Kinase associated domain 1, KA1 307 425 - -
Gabi3878g00025 432 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Gabi3878g00025 432 CDD CIPK_C 312 421 - -
Gabi3878g00025 432 Gene3D Transferase(Phosphotransferase) domain 1 18 300 - -
Gabi3878g00025 432 Pfam Protein kinase domain 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3878g00025 432 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Gabi3878g00025 432 SMART serkin_6 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3878g00025 432 FunFam Non-specific serine/threonine protein kinase 17 302 - -
Gabi3878g00025 432 ProSiteProfiles Protein kinase domain profile. 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3878g00025 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 22 368 - -
Gabi3878g00025 432 FunFam Non-specific serine/threonine protein kinase 19 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00025 Gabi-Chr3878 296178 297705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00025 9 429 CBL-interacting serine-threonine protein kinases AT4G14580 58.824 3.30e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3878g00025 Pkinase 7.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00025 K12761 - gmx:100784173 680.633