Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00024 ATGGTAGGATTGGAACTCATACCTATAGGTACAATTTTGGCCGTGGTAATCAACCAGGTCTCCAAAACAGCTCATGCAGCAGCTGATATTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAATATCTATTTGATATTGAGCCAGTGCTGAAGGAATTACAGCTTCAGGAATTGAATGAATCTCAAGCTGCAAGGGTTGCCCTGGAGTCTCTTGAAGCAGATGCTAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCAGTTTTTACTTACTGGTTAAGTGCCGATTGATAGTTGAGGAAGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCCGCACTGTCTATTGCAAATACTGAAGTCCTTTCAAGAATTTCTGATCAAGTTAATAGATTACAGAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTAGACCAGGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATTAGCAAAGAGTTGGCCAGCATTAGGAGAGAAAAAGAAGAAGCTGCCAACAGAAAAGAAAGAGCTGAAGTTATTTTCTTGGAACAGATCATTGAGTTACTCTCTCGAGCTGATGCAGCTAGGGATTATGAAGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTGATAGAGAGATATGATTCAAGGGAAAAATATATCCTACCACTTAATTCTTTCCTTTGTTGTATAACTGGAACTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTTACAATGGCAACAGGACAGACCCGGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTGCAGTAAAACAATCCATTGAAGAGTGGAGAGAACTTAATTATTGTCTCGTAATAAGGTCTATCAGGGAAAATTTATTAGGAAAATCTGACCTGCAAGGATCCCTGAGCCAAATTCAGGCTCTAATAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTGTTATCTCTGTTCTTGGGAACTCTGATGACAGAGAAGTGAAGATGAAGATTTTAATAACTTTGAAGGATGCTGTAGAGGGGCATGCAAAAAACAAGGAGAAAGTGGCTGAATCTCTAGGATGGGATCACATTATTTCCTGCTTAGGGAGTGACCCTAGCATTTCAAAGGCAGCAATTGATTTGCTATATGAGTTGCTTCAAGACCGATCTGGTTGGAATGAATGTTTCTGCAAAAAACTCTCTCAGAATCATACTGCAGTTCTTTTCCTTGTCACCCTTCTGAAGAATCCTGTAAATGATTCAGCTGACATCGCAGAAAAGATTTTGATGGAGCTTTTTGAAATAAATGAGGACAGCATTACTACTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGAATGATACGAGGAACGGATTCAAGAATATCAATGACAAAAGCCACAGTTAATTTGGAGTTGAGTGATTTGAACTTGAAACTCCTTGCCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTGGAAATATTGAATCAAAAGACTTGGCATTATCAGCCCTGGTTAAACTAGCAGGATCTCATTCCAATAAGGGAATCATTGCTGCATGTGGAGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGATACGGACATTCATTACCATTAAATGTTCTGAAATCCTTGAGAAGCTTTCTTCTGATAATGATGGAATTGTTTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCTCTGCAGCAGAGTTCTAACTCAGGTTACAACTTCCGAAAGCCTGTACTACGTGCTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCTAAAGGTGTATCTTTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAGTCCGGGAGAATGCTATCAATCTGCTCTTCCTTTTCTCTCAGCATGAGTCAGAAGGAATAGTTGAATACCTCCTCAGGCCTAGAAGGCTTGAAGCTTTGATTGGATTTCTTGAGAATGATGACAACGATAATGTGCAGATGGCAGCTGCTGGTTTGCTAGCAAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAATTGGGTGGACTTGATGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGATTCACAGCGGGATTTGGTTAAACGTGGAATATATCCTTTGCTTGTAAATTTTCTCAACACTGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCAACTAGTTGCTGGTTTTTTAAATCATCACGAGTTCCTTTATGTTCAGCACATGGGAGTGTATGCAGTGTGACTGACACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGATAAAGCTGTTACTTGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGGGGTGCTCGTGTCTTGCATGAATCAAATGCAATAAGACCCTTATTGGACATTTTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAACACTATGGAACAATAGCTAGATCACGTCTTGTTGGTCTTAATGGCATGCAGATATATGGTGATGGCCACCTCAGGAGAAAGGCTGCCAGGGTACTATCATTGCTTGAACGCTATTCAAAGACATCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 3042 0.4047 MVGLELIPIGTILAVVINQVSKTAHAAADILIGKESFKALSKYLFDIEPVLKELQLQELNESQAARVALESLEADAKKANNLVEKYRNRGSFYLLVKCRLIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQLQIVDKLDQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRREKEEAANRKERAEVIFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYDSREKYILPLNSFLCCITGTVMVDPVSLCTGTTCERSAIEAWFYNGNRTDPETKEVLEDTTLRSNIAVKQSIEEWRELNYCLVIRSIRENLLGKSDLQGSLSQIQALIRENSINKDWISIGELTDIVISVLGNSDDREVKMKILITLKDAVEGHAKNKEKVAESLGWDHIISCLGSDPSISKAAIDLLYELLQDRSGWNECFCKKLSQNHTAVLFLVTLLKNPVNDSADIAEKILMELFEINEDSITTAANFGWYKPLVDRMIRGTDSRISMTKATVNLELSDLNLKLLAKEGVIPPLLEMLSGNIESKDLALSALVKLAGSHSNKGIIAACGGVPLILDLMFSPRIRTFITIKCSEILEKLSSDNDGIVFFVDGEGKQLELDSIITNLLALQQSSNSGYNFRKPVLRALLGICKFETGLVKKAILAAKGVSLILPLLDDSDSEVRENAINLLFLFSQHESEGIVEYLLRPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIDSQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTSCWFFKSSRVPLCSAHGSVCSVTDTFCLLEANALPGLIKLLLGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAIRPLLDILNWGTDSLKAEALGLLEKVFVSKEMVEHYGTIARSRLVGLNGMQIYGDGHLRRKAARVLSLLERYSKTSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00024 1013 Gene3D - 345 524 IPR011989 -
Gabi3878g00024 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Gabi3878g00024 1013 SUPERFAMILY ARM repeat 634 972 IPR016024 -
Gabi3878g00024 1013 SUPERFAMILY ARM repeat 358 720 IPR016024 -
Gabi3878g00024 1013 Coils Coil 127 154 - -
Gabi3878g00024 1013 CDD MLKL_NTD 34 145 - -
Gabi3878g00024 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 334 IPR013083 -
Gabi3878g00024 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Gabi3878g00024 1013 Gene3D - 9 123 IPR036537 GO:0007166
Gabi3878g00024 1013 Coils Coil 62 89 - -
Gabi3878g00024 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Gabi3878g00024 1013 SUPERFAMILY RING/U-box 249 330 - -
Gabi3878g00024 1013 CDD RING-Ubox_PUB 265 314 IPR045210 -
Gabi3878g00024 1013 Gene3D - 525 853 IPR011989 -
Gabi3878g00024 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Gabi3878g00024 1013 Gene3D - 857 999 IPR011989 -
Gabi3878g00024 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Gabi3878g00024 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Gabi3878g00024 1013 Coils Coil 197 217 - -
Gabi3878g00024 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00024 Gabi-Chr3878 255243 260785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00024 264 962 U-box Gene Family AT1G20780 27.563 8.60e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00024 - - gmx:100783638 1653.26