Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00008 ATGGAGGAAAGGGTGAGTTTTGGTGCTGGGCATGCAGTGGTGGGGGATGAGGCCCCAGAGAGCTTCCACGTGGCTCCGAGGATTGAGAACAACTTGGACTTTTCCAGGGCCACGGTGCCGGCGCCGACGCCGGCGACGGTGCAGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGCACCGGACGGAAAGCTGGCGTTAGGGACTGTGACGGCGCTATCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCAGCTTGGAAACGAGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAGTTATCATATAAGTATGAAGTTGAAAGTCCAGGACCAGGTGAGGGAATTGCATACTCAGTTGGTGCCAATTTCACACCGCATGTGCTTACAGTAAATGCTGGCGAGGATATTACTATGAAGATTATGTCATTCTCTCAACAAGGATCACGTGCTATTTGCATTCTCTCTGCGACTGGCACAATTTCAAATGTTACACTTCGTCAACCGACTTCTTCCGGGGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCCGGTTCCTTTATGCCAACCGAGAATGGAGTTGCAAGAAGCAGATCTGGTGGGATGAGTGTCACTTTGGCAGGTCCCGATGGTCGAGTAATGGGGGGTGGACTTGCTGGTTTGCTGGTAGCTGCTGGTCCTGTGCAGGTTGTTGTGGGCAGTTTTCTTCCTGGTCACCAGCTTGAGCATAAACCCAAGAAGCAGAGGGTGGATCATATGCCAACTATGACCTCTACACATGTTAATGTTATATCTAATGAGGAAATAAATGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATAATGCTTCTTTTAACAATGTTCAAGACTCTAGGAACTCATCTGCTGATGATAAAGAGCCTTTACCTGAAAAGGAGTCTAACCTAGGCCAATCAAATGCTGAGGCTACATTGTGA 1002 0.484 MEERVSFGAGHAVVGDEAPESFHVAPRIENNLDFSRATVPAPTPATVQKKKRGRPRKYAPDGKLALGTVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKLSYKYEVESPGPGEGIAYSVGANFTPHVLTVNAGEDITMKIMSFSQQGSRAICILSATGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVARSRSGGMSVTLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKPKKQRVDHMPTMTSTHVNVISNEEINVSFGGVKPIMTPAAFQEENNASFNNVQDSRNSSADDKEPLPEKESNLGQSNAEATL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00008 333 Gene3D - 129 262 - -
Gabi3878g00008 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 310 IPR039605 GO:0003680
Gabi3878g00008 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 245 - -
Gabi3878g00008 333 ProSiteProfiles PPC domain profile profile. 124 264 IPR005175 -
Gabi3878g00008 333 MobiDBLite consensus disorder prediction 35 60 - -
Gabi3878g00008 333 MobiDBLite consensus disorder prediction 295 333 - -
Gabi3878g00008 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Gabi3878g00008 333 FunFam AT-hook motif nuclear-localized protein 1-like 129 259 - -
Gabi3878g00008 333 CDD DUF296 128 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00008 Gabi-Chr3878 65802 71879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00008 49 302 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 55.709 7.10e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00008 - - gmx:100789179 542.732