Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00003 ATGGGTTTTTCTGTGCTTGTTCTCTTCTCTTTCCTGTTTTTCCTCTTGAACTCAACATGTGTTTGTGGGAATGAAGAGCTGAAAGCACTGATGGACATTAAAGCCAGTTTGGATCCAGAGAGCCATTATTTACACTCATGGACTAACAATGGTAACCCATGTGGTGGTTCTTTTGAAGGAGTAGCATGCAATGAGAAGGGTCAGGTGGCAAACGTTTCTTTGCAGGGAAAGGGTCTCTCAGGGAAGCTTTCACCAGCCATTGCTGGGCTTGAGCACTTGACAGGACTCTACTTGCATTATAACTCTTTGTATGGTGAGATACCAAGAGAAATTGCAAACTTGACTGAGCTTAGTGATTTGTATTTGAATGTGAATCACCTGTCTGGGGAAATCCCTCCTGAGATCTCCAGCATGGAGAACTTGCAAGTTTTGCAGCTTTGTTGTAACCAGTTGACAGGAAGCATACCTACACGGCTTGGTGCTTTGAAAAAGCTTAGTGTTGTTGCTCTGCAGTCAAATCAGTTAACTGGTGCTATCCCTGCTAGTCTCGGTGATTTGGGTATGCTGGTGAGGTTAGATTTGAGCTCTAATCATTTCTTTGGTTCCATTCCCACAAGCCTAGCCGATGCTCCTTCACTGAAAGTTCTAGATGTTCACAACAATTCACTTTCTGGGAATGTACCTCCTGCTCTGAAGAGACTAGATGATGGTTTTTTGTATGAACAAAATCTGGGGTTATGTGGAGTTGAGTTTTCATCCCTGAAAACTTGCAATGCTTCGGATCATGTCAATCCCAGCAGACCTGAACCTTATGGAGCACCAACAAGAGATATCCCAGAAACTGCAAACGTTAAGTTACCTTGCAATGGAACTCGGTGCTTGAATTCATCAAAGTCCACTCAAGCCACATCAGTTACAGTTGGCATATTTGTGTCTGTAATTGCAATGTCAGCAATAGGTGTTTTGACCTTCATACTATATCGTAGGAGGAAACAAAAGCTTGGAAATTCTTTTCATATCTCTGATAGCCGTCCAAGTACTGATGAAGCCAAGGGTGTATACAGGAAAAATGGATCTCCTTTGGTCAGTCTTGAGTACTCTTCTGGATGGGACCCTTTGGCTGATTGTAGGAATTTCAATGGGGGTAGCCAAGATATATTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAATATTTCTCGGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTGTTGTGGCTGTGAAGAGCATCAGTAAAACTAGTTGTAAGTCGGATGAATCTGAGTTCTTGAAGGGATTGAACATTTTGACCTTATTGAGGCATGACAATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGTTTTCTGATTTATGATTTTGTTTCTAATGGAAACCTGTCACGCTTCCTTGATGTGAAAGAAGGTGATGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGAATTGCTAAAGGTATGGCATATTTACATGCATACAAAGCGAACAAACCGATTCTTGTTCACCAAAACATCTCAGCTGACAAAGTTCTCATTGATCAGCGGTACAATCCATTGCTAGCAGATTCTGGCCTTCACAAGCTTCTTACTAATGATATTGTCTTCTCAGCACTTAAGGCTAGTGCAGCAAAGGGTTACTTGGCTCCTGAATACACTACTACAGGCCGGTTTGCTGAGACAAGCGATGTTTTTGCTTTTGGGGTGCTGGTTTTCCAGATCCTTTCAGGGAAGCAGAAGATCACTAGCTCAATAAGGCTTGCTGCAGAATCCTTAAGATTCCAAGAATTTATTGACCCTAATCTCCATGGCAGGTTCTTTGAATATGAGGCAGCTAAACTAGCAAAGATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTTGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGCAATTGTAGTAGCTGTCTCTGA 2031 0.4215 MGFSVLVLFSFLFFLLNSTCVCGNEELKALMDIKASLDPESHYLHSWTNNGNPCGGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLEHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPPEISSMENLQVLQLCCNQLTGSIPTRLGALKKLSVVALQSNQLTGAIPASLGDLGMLVRLDLSSNHFFGSIPTSLADAPSLKVLDVHNNSLSGNVPPALKRLDDGFLYEQNLGLCGVEFSSLKTCNASDHVNPSRPEPYGAPTRDIPETANVKLPCNGTRCLNSSKSTQATSVTVGIFVSVIAMSAIGVLTFILYRRRKQKLGNSFHISDSRPSTDEAKGVYRKNGSPLVSLEYSSGWDPLADCRNFNGGSQDIFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDESEFLKGLNILTLLRHDNLVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGIAKGMAYLHAYKANKPILVHQNISADKVLIDQRYNPLLADSGLHKLLTNDIVFSALKASAAKGYLAPEYTTTGRFAETSDVFAFGVLVFQILSGKQKITSSIRLAAESLRFQEFIDPNLHGRFFEYEAAKLAKIALLCSHESPFERPSMEAIVQELGNCSSCL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00003 676 Gene3D Transferase(Phosphotransferase) domain 1 483 675 - -
Gabi3878g00003 676 Gene3D Ribonuclease Inhibitor 20 267 IPR032675 -
Gabi3878g00003 676 SUPERFAMILY L domain-like 20 233 - -
Gabi3878g00003 676 FunFam Protein NSP-INTERACTING KINASE 2 136 258 - -
Gabi3878g00003 676 SUPERFAMILY Protein kinase-like (PK-like) 385 669 IPR011009 -
Gabi3878g00003 676 FunFam Leucine-rich repeat receptor-like kinase 25 134 - -
Gabi3878g00003 676 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 670 - -
Gabi3878g00003 676 FunFam Protein NSP-INTERACTING KINASE 2 375 482 - -
Gabi3878g00003 676 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Gabi3878g00003 676 Pfam Protein tyrosine and serine/threonine kinase 408 669 IPR001245 GO:0004672|GO:0006468
Gabi3878g00003 676 FunFam Protein NSP-INTERACTING KINASE 2 483 673 - -
Gabi3878g00003 676 ProSiteProfiles Protein kinase domain profile. 404 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3878g00003 676 Gene3D Phosphorylase Kinase; domain 1 378 482 - -
Gabi3878g00003 676 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00003 Gabi-Chr3878 19446 22267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00003 4 517 Miscellaneous Gene Families AT4G22730 55.114 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gabi3878g00003 PK_Tyr_Ser-Thr 5.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00003 - - gmx:100816801 1150.58