Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3878g00002 ATGGCTTCCCTGGCCGCTTCCACCGCGGCTGCTTCCCTTGGCATGTCGGAAATGCTCGGAAACCCCGTGACCCTCAGTGGCGCCACCAGGTCAGCTCCATCACCCTCTAGCCCTGCAACCTTCAAGACTGTTGCTCTTTTCTCCAAAAAGAAGGCAGCACCACCACCAAAGCAAGCTGTATCTCCTGCCAATGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGGATCTTCTTGCCAGATGGTCTCTTGGACCGATCAGAGATCCCTGAGTACTTGACAGGAGAAGTGCCTGGAGATTATGGTTATGATCCATTTGGTCTTGGCAAGAAGCCAGAGGACTTCGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATTTGGAGCTAACTGTGGTCCTGAGGCAGTTTGGTTCAAGACCGGAGCATTGCTTCTTGATGGGAATACGTTGAACTACTTTGGGAAACCTATCCCCATCAATCTTATTGTTGCTGTCATTGCTGAGATAGTTCTTCTGGGTGGTGCAGAGTACTACAGAATAACTAATGGCCTGGATTTCGAAGACAAGCTTCATCCAGGTGGTCCATTCGATCCATTGGGGCTAGCAAATGATCCAGACCAAGCTGCATTGCTAAAGGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTTCTTGCAAGCTTATGTCACTGGAGAAGGTCCAGTTGAGAACTTAGCAAAACATCTCAGTGACCCTTTTGGTAACAACTTGCTCACTGTGATTGCTGGCACTGCTGAGAGGGCTCCAACTCTCTGA 867 0.489 MASLAASTAAASLGMSEMLGNPVTLSGATRSAPSPSSPATFKTVALFSKKKAAPPPKQAVSPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINLIVAVIAEIVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3878g00002 288 Gene3D Chlorophyll a/b binding protein domain 77 288 - -
Gabi3878g00002 288 Pfam Chlorophyll A-B binding protein 90 251 IPR022796 -
Gabi3878g00002 288 SUPERFAMILY Chlorophyll a-b binding protein 70 279 - -
Gabi3878g00002 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 28 277 IPR001344 GO:0009765|GO:0016020
Gabi3878g00002 288 FunFam Chlorophyll a-b binding protein, chloroplastic 77 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3878g00002 Gabi-Chr3878 9218 11766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3878g00002 11 288 Chloroplast and Mitochondria Gene Families AT4G10340 85.663 9.33e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3878g00002 K08916 - gmx:100789786 515.383