Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3876g00002 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACTCAACATTCTTCCCCAATCCTCAGCTTCCCCTTCATCAGGAAGCATCTTCTAATGTCACAAATCAGGAGACTAGTTGTGTTGATCAAAGCTCCAAGATTACCATCAGTGACAATGAGCCTTCTGTGACCAAAAACCTTAGTCCTCAATCGTCTATGGTATTGGACAAGTTTGAAACAGGTGAGCAAGTCACTCAGAAGGTGACTCCTATGGAGAAAAAGAGGAGAATCAGAAATGGATCTTCCTTAAGTAACCCCCAATCTAAGGATACTGATACAGAAGGGAGAAACAAGAAACTGAAGAAGAGCAATGGTGGGGTGAAAGAGGAGGACAAGCAAAAAGAAGAGAAGAGGGATCAGAGAAAATGTCCACAAGAGAGCCCAACAGGTTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGTGTGAATGTTGGAAAAAATGGATTTTTCAGGTGAGAAGAGAGAAAATAAATGAAAAGATGAAGATGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTATGACTTGGCAACAGACCTAGACACCCTCATGGTTAGACCAGAGAGATTAAATAGCATAGCATCTCCATCACCACTTCCATCTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATATTCCCCACTGCTAGTGACTGCCTTTTGGATAGTTCAGCTTCATTTTTTCTTCAAGGCAAGAGATCAAATGTCTTCTCTGAGGATAATGGTAGTCATTTCTTGGACGCAGAAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1008 0.4196 MAAFSYQYHPFLVDSTFFPNPQLPLHQEASSNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVLDKFETGEQVTQKVTPMEKKRRIRNGSSLSNPQSKDTDTEGRNKKLKKSNGGVKEEDKQKEEKRDQRKCPQESPTGYIHVRARRGQATDSHSLAERCECWKKWIFQVRREKINEKMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLMVRPERLNSIASPSPLPSVSHCNSPNQATTFADTTTIFPTASDCLLDSSASFFLQGKRSNVFSEDNGSHFLDAEDQRQKFLHPYGFSNNLCSFH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3876g00002 335 MobiDBLite consensus disorder prediction 49 80 - -
Gabi3876g00002 335 SMART finulus 173 219 IPR011598 GO:0046983
Gabi3876g00002 335 Gene3D - 150 233 IPR036638 GO:0046983
Gabi3876g00002 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 257 IPR024097 GO:0006355
Gabi3876g00002 335 MobiDBLite consensus disorder prediction 104 137 - -
Gabi3876g00002 335 Pfam Helix-loop-helix DNA-binding domain 175 214 IPR011598 GO:0046983
Gabi3876g00002 335 CDD bHLH_AtBPE_like 143 238 - -
Gabi3876g00002 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Gabi3876g00002 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 230 IPR036638 GO:0046983
Gabi3876g00002 335 FunFam Basic helix-loop-helix transcription factor 150 232 - -
Gabi3876g00002 335 MobiDBLite consensus disorder prediction 49 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3876g00002 Gabi-Chr3876 10004 12454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3876g00002 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.234 2.26e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3876g00002 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3876g00002 - - gmx:100806696 509.605