Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3876g00001 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACTCAACATTCTTCCCCAATCCTCAGCTTCCCCTTCATCAGGAAGCATCTTCTAATGTCACAAATCAGGAGACTAGTTGTGTTGATCAAAGCTCCAAGATTACCATCAGTGACAATGAGCCTTCTGTGACCAAAAACCTTAGTCCTCAATCGTCTATGGTATTGGACAAGTTTGAAACAGGTGAGCAAGTCACTCAGAAGGTGACTCCTATGGAGAAAAAGAGGAGAATCAGAAATGGATCTTCCTTAAGTAACCCCCAATCTAAGGATACTGATACAGAAGGGAGAAACAAGAAACTGAAGAAGAGCAATGGTGGGGTGAAAGAGGAGGACAAGCAAAAAGAAGAGAAGAGGGATCAGAGAAAATGTCCACAAGAGAGCCCAACAGGTTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAATGAAAAGATGAAGATGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTATGACTTGGCAACAGACCTAGACACCCTCATGGTTAGACCAGAGAGATTAAATAGCATAGCATCTCCATCACCACTTCCATCTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATATTCCCCACTGCTAGTGACTGCCTTTTGGATAGTTCAGCTTCATTTTTTCTTCAAGGCAAGAGATCAAATGTCTTCTCTGAGGATAATGGTAGTCATTTCTTGGACGCAGAAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 978 0.4233 MAAFSYQYHPFLVDSTFFPNPQLPLHQEASSNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVLDKFETGEQVTQKVTPMEKKRRIRNGSSLSNPQSKDTDTEGRNKKLKKSNGGVKEEDKQKEEKRDQRKCPQESPTGYIHVRARRGQATDSHSLAERVRREKINEKMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLMVRPERLNSIASPSPLPSVSHCNSPNQATTFADTTTIFPTASDCLLDSSASFFLQGKRSNVFSEDNGSHFLDAEDQRQKFLHPYGFSNNLCSFH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3876g00001 325 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 248 IPR024097 GO:0006355
Gabi3876g00001 325 MobiDBLite consensus disorder prediction 49 80 - -
Gabi3876g00001 325 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Gabi3876g00001 325 MobiDBLite consensus disorder prediction 49 159 - -
Gabi3876g00001 325 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Gabi3876g00001 325 MobiDBLite consensus disorder prediction 104 137 - -
Gabi3876g00001 325 CDD bHLH_AtBPE_like 143 228 - -
Gabi3876g00001 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Gabi3876g00001 325 Gene3D - 150 223 IPR036638 GO:0046983
Gabi3876g00001 325 SMART finulus 159 209 IPR011598 GO:0046983
Gabi3876g00001 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3876g00001 Gabi-Chr3876 10004 12454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3876g00001 1 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.710 1.85e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3876g00001 HLH 8.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3876g00001 - - gmx:100806696 517.694