Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3871g00004 ATGGTGTCCGTGAACCCTAACCCAGCTCAAGGCTTTTACTTCTTCGATCCTTCCAATATGGCCCTTCCTGGTGTCAATCCTCTCCCACCTCCGCCACCGCAGCCTCCTGCTCCGGCCGCAACCTCCTCCACCACCGCAGAGGACCCGAATAAGAAGATCCGAAAACCATATACGATTACCAAGTCTAGGGAGAGCTGGACGGAGCAGGAACACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGTGACTGGAAAAAGATTGAAGCATTTGTCGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAAAAGTATTTTCTTAAAGTTGAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATATCCTCAAAAAGCTCCTAAAATCACTCCTACTGTATCCCAAGTCACAGGGCCATTGCAATCTTCATCTGCTTTCATTGAACCTGCCTATATTTATAACCCAGATTCATCATCTGTGCTTGGAACTCCAGTTACTAATGTGCCTTTATCATCTAAGAATTACAGTGCTATACTGCCAGTTAGTGTGCCACAAGTGACTAGAGATGACACGGGATTGACTGGAGCTGGACAAGATGTTCCTCCTAATTGTTGCTACAGCAGTAGTAATGAGAATACACCTCCAGCCTGGCCAAGTAGCAAAGGGATTAATCAAGGCGACCAAGGCAAGCCAGTTAAAGTAATGCCAGATTTTGCACAAGTGTACAACTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAGACTGAGACAGATGGACCCAATAAATGTTGAAACGGTACTGTTGTTGATGAGAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCATCATATGATGCTGACTCCGAGAGGGCAAAGTTTGTTAATCTTCGTAGCAAATCCCTCACTGACAAATCTGAGAGTGCTGTTCTGTCTGCTTAA 1011 0.4431 MVSVNPNPAQGFYFFDPSNMALPGVNPLPPPPPQPPAPAATSSTTAEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVEKNGTSEHVPPPRPKRKAAHPYPQKAPKITPTVSQVTGPLQSSSAFIEPAYIYNPDSSSVLGTPVTNVPLSSKNYSAILPVSVPQVTRDDTGLTGAGQDVPPNCCYSSSNENTPPAWPSSKGINQGDQGKPVKVMPDFAQVYNFIGSVFDPNSTNHLQRLRQMDPINVETVLLLMRNLSINLMSPEFEDHKRLLSSYDADSERAKFVNLRSKSLTDKSESAVLSA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3871g00004 336 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Gabi3871g00004 336 CDD SANT 65 108 IPR001005 -
Gabi3871g00004 336 PANTHER SWI/SNF COMPLEX-RELATED 33 294 - -
Gabi3871g00004 336 SMART sant 62 110 IPR001005 -
Gabi3871g00004 336 ProSiteProfiles SANT domain profile. 61 114 IPR017884 -
Gabi3871g00004 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 48 68 - -
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 115 147 - -
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 219 237 - -
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 23 39 - -
Gabi3871g00004 336 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Gabi3871g00004 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Gabi3871g00004 336 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Gabi3871g00004 336 Gene3D - 66 113 - -
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 219 240 - -
Gabi3871g00004 336 MobiDBLite consensus disorder prediction 23 68 - -
Gabi3871g00004 336 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3871g00004 Gabi-Chr3871 38782 44618 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3871g00004 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3871g00004 - - gmx:778090 536.954