Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3867g00002 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTTAAAGAATATTTTGGGAATTATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGATCAACAGGTCGTGCTCGTGGTTTTGGTTTCATTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGAACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAATACAATATAAATAGGCAGTCTGGTAGTCTACATGCATCTCCTGGTCATGGACGCACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATCACTGAAGGTGATTTTAAGAAGTATTTTGATCAGTTTGGTGCAATTACTGATGTTGTAGTTATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCAGAAGATGCTGTGGATAGAGTTCTTCATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCAAGCCGGAGCCCATTGATAGGATATAACTATGGTTTAAATAGGGCCAGTAGTTACCTAAATAGTTATGCTCAGGGTTATAGCATGAGTCCCATAGGAGGATATGGAGTCAGAATGGATGGTAGGTTTAGTCCACTTACTAGTAGTAGAAGTGGGTTTAGTCCTTTTGGTAACACTGGTTATGGAATGGGGGTGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGAACTTCTAATTATGGGAGCAATTTAGGATATGGTCGAATATTTAGTCCTTTCTATGGTGCCAACTCAAGCAGATATTCCACTCCTATAGGCTTTAGTGGGGGTAATGGGAGAAGCGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAACAACCCAGTCAGCCCTGGTTCTTTCTTGGGATCTGGAAGTGGGACTTTTGGTGGTTCAATTGGAAACACTGGCACAAGTTGGGGTCCGTCGATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTTCAGGAGTGACTCCATCCTCTACATTTATGGCATCAACTGGTGGTTATGAAGGATCCTACGGGGACTTATACCGCGGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGGTCTGCTTCTTCTGAGATAGATGTTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCTGATGACCCAGTAAAGAGTTCTGAGGATTATATTGGAAACTACAATGTTACTGGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1440 0.4347 MESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRSTGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQYNINRQSGSLHASPGHGRTKKIFVGGLPSTITEGDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTSSRSGFSPFGNTGYGMGVNLDSGLSPSFGGTSNYGSNLGYGRIFSPFYGANSSRYSTPIGFSGGNGRSDSLMNSTSRNVWGNGGLNNANNPVSPGSFLGSGSGTFGGSIGNTGTSWGPSIPAQGGGAASGYATGSNVYEGGDSSFGLGGGGYGRNSSSGVTPSSTFMASTGGYEGSYGDLYRGGSGSVYNDSTWRSASSEIDVSGSFGYGLGGIASDDPVKSSEDYIGNYNVTGRQPNRGIAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3867g00002 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gabi3867g00002 479 Gene3D - 103 189 IPR012677 -
Gabi3867g00002 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gabi3867g00002 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gabi3867g00002 479 Gene3D - 6 88 IPR012677 -
Gabi3867g00002 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Gabi3867g00002 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Gabi3867g00002 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gabi3867g00002 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Gabi3867g00002 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Gabi3867g00002 479 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Gabi3867g00002 479 CDD RRM2_Hrp1p 107 184 - -
Gabi3867g00002 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Gabi3867g00002 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gabi3867g00002 479 SUPERFAMILY RNA-binding domain, RBD 106 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3867g00002 Gabi-Chr3867 10499 14336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3867g00002 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.034 4.63e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3867g00002 K14411 - gmx:100805131 837.795