Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00066 ATGGGGAGAGCACCTTGCTGTGACAAAGCCAACGTCAAGAAAGGACCATGGTCGCCTGAAGAAGATGCAAAACTCAAGTCTTATATCGAGCAGCATGGTACAGGTGGCAACTGGATAGCCTTGCCCCAGAAGATAGGCCTCAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATTAGACATGGGGGTTTCTCAGAAGAAGAAGACAACATTATCTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCGCAATTACCAGGGCGTACGGATAATGATATAAAGAACTATTGGAACACAAGGCTGAAGAAGAAGCTTCTTGGCAAGCAAAGGAAAGAGCAACAAGCTCAAGCTCGCCGAGTCAGCAACCTAAAGCAAGATCAGATGATAAGAGAAACCACCGAGAATTTGATGGTGGGTTCTGGAGTTATGAGTCATGCTCCCTATTGGCCTGCAGAGTATTCTGTTCACATGCCAGTGGCAAATGCTTCCATTCAAGACTATGATCTCAACAATCAAACATCCATCAGAAGCTTAATGAATATGATAAACCAAGTGGCCATACTGAGTAATGCAAACAATAGTGGCAGTACTTGTCAGCCATCAAATATATTTCAAGGGTTTTTTGAAAACTTACCAAATGATTTGAGTGAGCTGGTCTATGTGAACCCGCAACAAATAGAGGGTTTTTATGGAATGGAATCCATGGACATGAGCAATGGTAGCACCATCACAACTTCAACAGAAAGCACTAGTTGGGGTGATATGAACTTTGGTTTACTCACCTTTGGTTTCTGA 831 0.432 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSNLKQDQMIRETTENLMVGSGVMSHAPYWPAEYSVHMPVANASIQDYDLNNQTSIRSLMNMINQVAILSNANNSGSTCQPSNIFQGFFENLPNDLSELVYVNPQQIEGFYGMESMDMSNGSTITTSTESTSWGDMNFGLLTFGF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00066 276 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi3865g00066 276 CDD SANT 71 113 IPR001005 -
Gabi3865g00066 276 FunFam Transcription factor RAX3 70 147 - -
Gabi3865g00066 276 SMART sant 13 64 IPR001005 -
Gabi3865g00066 276 SMART sant 67 115 IPR001005 -
Gabi3865g00066 276 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi3865g00066 276 PANTHER OS09G0431300 PROTEIN 1 217 - -
Gabi3865g00066 276 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi3865g00066 276 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi3865g00066 276 CDD SANT 16 62 IPR001005 -
Gabi3865g00066 276 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi3865g00066 276 Gene3D - 69 142 - -
Gabi3865g00066 276 Gene3D - 7 68 - -
Gabi3865g00066 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi3865g00066 276 FunFam Transcription factor RAX3 7 68 - -
Gabi3865g00066 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00066 Gabi-Chr3865 621842 623136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00066 1 126 MYB Transcription Factor Family AT3G49690 92.857 2.25e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3865g00066 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00066 K09422 - gmx:106795158 393.275