Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00063 ATGAAGCCCATAGGAACTAGTAGTACCTTTAACGTTAACGATCAAAATAACTGGTTGGGTTTCTCCCTCTCTCCCCAAATGGATATAGGTGTTTCTTCACAACCTCATCACCATCTTCAGACACAGCCTTCCTCTGCTGCTGCTGAAGCAGTTCCACCAAGCTTTTACCACCCTACACATCTTCATAACTATGGCTTTTACTATGGACTGGAAGGTGAAAATGTTGGATTGTATTCAGCCTTGCCTGTCATGCCCCTCAAATCCGATGGCTCGCTCTATGGAATAGAAGCTCTGAGTAAATCACAAGCACAAGCAGTGACAACTACTTCAACACCAAAACTAGAAAATTTCTTAGGTGACCAGACAATAGCGACCCCTAACTATGAATGCAACACCAGAGAAGCAACGCCTCTGAGCTTAGATAACCTAAATCATGTACAAGAGAATATCAGGCAACAACAATTCTCATATTATTCTGCCTTAAGAAATCATGATGTGATGTTAGAAGGGTCCAAGCAAAATCAGACTTCAGAAAGTCTCCAGCACCCAAATATGGCCGAGGATGAAATTTTTGGTCTGAAGAGCTGGGTCTCAAGGGACTTTCCTACTAGCCATGCACAGGATTCAAAGATGATTGTTCCTGTGGAGGATAATGGAGGTGAATCAGGGTCCATCGGATCAATGATATATGGGGATTTACATTCATTGAGCTTGTCCATGAGTCCTGACTCACAATCGAACTGTGTCACTTGTTCACAACAGACAGCAACTACTCTCATTGATTCTGTTGTCATTGACAGGAAGAAAAGAGGGCCTGAGATGGTGGACCAGAATAAGAAGCAAATCGTTCACAGGAAATCCATTGATACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATCGGTGGACTGGTAGATATGAAGCTCATCTATGGGATAATAGCTGCAAGAAAGAGGGCCAAGGCAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACATGAGGAAATGAAGAACATGACCAGACAAGAATGTATTGCTCATTTACGCAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAGTACACAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATACGATGTGGAAAAAATTATGGCTAGCAATGACCTTCTTAGCAGTGAACTAGCTAGACGGAACAGAGAGATGGGCGGTGGAAATGGGAACGAGGCTAGTAACCATAAACCTTCTACTATATATGATGACACTCAAGAAGCCATTCTAATGCAGAAGAGCTGCAAAAGCCAATCAGAGTTGAAGATGGTTCTCTATCAATCCTCCCAACAAATTGAGAGTTGCAGAACTGATCAGTCTTTCTCGATGGCTTTAGATAACATATTTCATCAAGAAGTAGAGGAATTGAGTAAGATTGGATCAAATATGTCAAATCCTTCTTCGCTTGCAACAAGCTTGAGCAGTTCAAGAGAAGAAAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAACGTCTAAATTATTAGCTACCCTTCCAACTAGTAACGTGGATTCTTGGGAGCCATTAGCACATCTCAGGCCTGCGCTTTCGTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACCGATTCATAA 1905 0.4247 MKPIGTSSTFNVNDQNNWLGFSLSPQMDIGVSSQPHHHLQTQPSSAAAEAVPPSFYHPTHLHNYGFYYGLEGENVGLYSALPVMPLKSDGSLYGIEALSKSQAQAVTTTSTPKLENFLGDQTIATPNYECNTREATPLSLDNLNHVQENIRQQQFSYYSALRNHDVMLEGSKQNQTSESLQHPNMAEDEIFGLKSWVSRDFPTSHAQDSKMIVPVEDNGGESGSIGSMIYGDLHSLSLSMSPDSQSNCVTCSQQTATTLIDSVVIDRKKRGPEMVDQNKKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNEHEEMKNMTRQECIAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNDLLSSELARRNREMGGGNGNEASNHKPSTIYDDTQEAILMQKSCKSQSELKMVLYQSSQQIESCRTDQSFSMALDNIFHQEVEELSKIGSNMSNPSSLATSLSSSREESPDKTSLPMLFGMPSTTSKLLATLPTSNVDSWEPLAHLRPALSLPQMPVFAAWTDS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00063 634 Gene3D AP2/ERF domain 296 365 IPR036955 GO:0003700|GO:0006355
Gabi3865g00063 634 Gene3D AP2/ERF domain 399 459 IPR036955 GO:0003700|GO:0006355
Gabi3865g00063 634 ProSiteProfiles AP2/ERF domain profile. 297 363 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 SUPERFAMILY DNA-binding domain 398 458 IPR016177 GO:0003677
Gabi3865g00063 634 FunFam AP2-like ethylene-responsive transcription factor 398 459 - -
Gabi3865g00063 634 ProSiteProfiles AP2/ERF domain profile. 399 457 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 MobiDBLite consensus disorder prediction 558 581 - -
Gabi3865g00063 634 CDD AP2 296 363 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 Pfam AP2 domain 400 449 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 Pfam AP2 domain 297 355 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 534 - -
Gabi3865g00063 634 MobiDBLite consensus disorder prediction 558 584 - -
Gabi3865g00063 634 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 PRINTS Ethylene responsive element binding protein signature 439 459 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 CDD AP2 398 459 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 SUPERFAMILY DNA-binding domain 296 365 IPR016177 GO:0003677
Gabi3865g00063 634 SMART rav1_2 399 463 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 SMART rav1_2 297 369 IPR001471 GO:0003700|GO:0006355
Gabi3865g00063 634 FunFam AP2-like ethylene-responsive transcription factor ANT 296 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00063 Gabi-Chr3865 535111 538344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00063 380 634 AP2-EREBP Transcription Factor Family AT4G37750 26.280 1.60e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi3865g00063 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00063 K09285 - gmx:100792451 855.899