Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00052 ATGCCGATGTTTCTGGTTTCCAAGAGGGATATGGTTGCTGGGTTCGACGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTCAAAGACGGTGTTTTGGGCGGTGTTGACGGTGGGGTTGTGGGGACTGGGGTGTGTGAGAAATTGGATCTGGGGAAGATGATTGAAGAGCTGGACTTATGCGAAGTGCCCAGTGTGTTCATATGCCCAATCTCTCTCGAACCAATGCAAGACCCTGTGACGCTTTGCACGGGTCAAACCTACGAGAGGTTCAACATTCTGAAATGGTTCAACTTGGGGCATTTCACATGCCCCACTACGATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACCACCCTTTACAGGCTCATATACACGTGGTTCTCTCAGAAGTACCTGCTGACGAAGAAGAGGTCAGAGGATGTGCAGGGAAGGGCTTCGGAACTTCTGGAGACACTGAAGAAGGTGAAGGGTCAAGCTCGAGTTCAGGCCCTCAAGGAACTCCATCAGGTGGTGGGTGCTCATGCCACTGCCCGAAAGACAGTGATTGATGAAGGTGGAGTCTCTCTTATGTCTTCTTTACTTGGTCCTTTTACTTCCCATGCTGTTGGTTCTGAAGTCATTGGTATTCTTGTGAGTTTGACACTTGATTCGGAATCCAAAAAGAATCTTATGCAGCCTGCCAAAATTTCGTTGATGGTGGACATCTTGAACGAGGGTTCAATTGAGACCAAAATCAATTGCACGCGTTTCATTGAATCCTTAATTGAGGAGAAGGATTTTCGTTCGGAGCTTGTCTCAAGCCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAAAGACACAGTAACGGAATCTGTCCTGGGCTAAGTCTCCTCAGAACAATATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTGAGCATTGGGGCTGTTTCACAATTGGTTGAATTGTTATCTGGTATGGACCCTGATTGTTTGGAATTAGCCCTTTGTGTTTTAGATGCGTTGGCATCAATACCTGAAGGCAGAGTGGCTTTGAAAGGTTGCTCTAACACCATACCCATCATGGTGAAACTGTTGATGAGGATCTCAGAGAACTGCACCCAGTATGCATTGTCAATCCTATGGTCTGTGTGCAAGCTTGCGCCTGAGGAATGCTCATCAATTGCCGTGGATGCAGGGCTTGCTGCAAAACTTCTTCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAACAACAATCCGCCGAGCTATTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1350 0.4652 MPMFLVSKRDMVAGFDGGGDGQILDLDTAVKDGVLGGVDGGVVGTGVCEKLDLGKMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERFNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLTKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVGAHATARKTVIDEGGVSLMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRFIESLIEEKDFRSELVSSHSLLVGLMRLVKDKRHSNGICPGLSLLRTICLHKEVRNLLVSIGAVSQLVELLSGMDPDCLELALCVLDALASIPEGRVALKGCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00052 449 SUPERFAMILY RING/U-box 59 135 - -
Gabi3865g00052 449 Gene3D - 138 444 IPR011989 -
Gabi3865g00052 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Gabi3865g00052 449 SUPERFAMILY ARM repeat 153 434 IPR016024 -
Gabi3865g00052 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Gabi3865g00052 449 PANTHER WDSAM1 PROTEIN 60 435 IPR045185 GO:0061630
Gabi3865g00052 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Gabi3865g00052 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Gabi3865g00052 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00052 Gabi-Chr3865 421686 424226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00052 1 449 U-box Gene Family AT3G49810 75.947 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00052 - - gmx:100779827 787.334