Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00039 ATGGGTGCTCCTAAGCAAAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAAGCTGGAGTAATCAAACATGGGGCTGGAAAATGGCGCACTATACTTACAGACCCTGAGTTTAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCTCTAAAAAGGAACCTGCCAACCCCCAAAGTCGATAACAACCACATGGCCTTGCGTACCATAGTCCAACGCGATGGAGAAGTTGCAGATACTAAGCCCGTAGCAGTTTCTGGTGAAACATCTCCTAATTCAAAAGAACAAATATCAAGGTTGGATAATCTTATATCGGAGTCTATTATGAAGTTGAAGGAGCCAAAGGGTTCTGACAGAGCTGCCATTGCTTCTTTTATAGAGGATCAATATTGGTCTCCGCCGAACCTCAGAAAGTTACTTTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATCAAGGTAAAGCATAAGTACAGAATTGCAGCAAATTCAACAATACCAGAGAAAAGAAGATGCTCTTCCTTGTTACAAATGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAATACTGATGTCAACATCCTTTCAAAATTCCAAATTGATGCAGAACTATCAAAAATGAAGGGTGTGACAGCTCAAGAGGCTGCGGCAGCAGCTGCAAAAGCGGTGGCAGAGGCAGAAGCCGCCATTGCCGAGGCTGAGGCAGCAGCTAGAGAGGCAGAGGCTGCAGAAGCCGAAGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACACTTCATATTTGA 879 0.4471 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKVDNNHMALRTIVQRDGEVADTKPVAVSGETSPNSKEQISRLDNLISESIMKLKEPKGSDRAAIASFIEDQYWSPPNLRKLLSTKLKHMVASGKLIKVKHKYRIAANSTIPEKRRCSSLLQMEGRPKDSPKAENTDVNILSKFQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKTLHI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00039 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gabi3865g00039 292 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3865g00039 292 Pfam linker histone H1 and H5 family 122 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3865g00039 292 CDD SANT_TRF 6 57 - -
Gabi3865g00039 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gabi3865g00039 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3865g00039 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gabi3865g00039 292 SUPERFAMILY "Winged helix" DNA-binding domain 116 194 IPR036390 -
Gabi3865g00039 292 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
Gabi3865g00039 292 CDD H15 123 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3865g00039 292 FunFam Telomere repeat-binding factor 1 2 58 - -
Gabi3865g00039 292 Gene3D - 115 194 IPR036388 -
Gabi3865g00039 292 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Gabi3865g00039 292 Gene3D - 2 59 - -
Gabi3865g00039 292 Coils Coil 240 274 - -
Gabi3865g00039 292 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00039 Gabi-Chr3865 357117 361693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00039 1 288 Single Myb Histone (SMH) Gene Family AT5G67580 57.338 5.20e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3865g00039 Linker_histone 5.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00039 K09422 - gmx:778165 412.149