Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00029 ATGGGGAAGAAGCAACACAGCAAGGATAGGATGTTCATCACTAAAACTGAGTGGGCAACGGAATGGGGAGGAGCCAAATCCAAAGAAAATCGCACTCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTTCCCGGTTTGCACAGCTGATGGCAGTGTTTTCGATGTTATGAACATAACCCCTTATATTATAAAATATGGTAAACATCCTGTCACTGGAGCTCCCCTTAAGCAGCAGGATCTCATTGCACTAAATTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCTGTGAAGACCACAGGAAATGTGTTCTGCTATGAGGCCGTTAAAGAATTAAACATCAAGACGAAAAACTGGAAAGAGCTCCTCACTGATGAGGCATTCACCAAGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTTTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGAACTACAGAGAATGGGTTCAGATCCAACCTATAACATAAACATGTCGGGAGATATCAAGCAAATGCTTCAGGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCGATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACTTGTTAAAGAAGATTCCAAATCAAATCAAAATGGAGAGGTCAAAGCTCCTCAGGCATTTAGTATTGTAGATGCTGCATCTGCTTCAGTACATGGGAGAAGTGCAGCCGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGAATAGCTATGCACGTAGCTGGTGACAGGGCGCCAGTGAATGCAAAGATGGTGAAAAGCCGTTTTACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCGTACAACACACGGTGATCTGAACATTGAGCTGCATTGTGATATAACACCCAGGACATGTGAGAATTTTATCACGCTTTGTGAACGTGGATATTATAATGGGGTTTCTTTTCATAGAAACATTAGGAATTTTATGATTCAAGGCGGTGATCCGACTGGTACTGGTAAAGGAGGTGAATCAATATGGGGAAAGCCTTTCAAAGATGAACTTAACTCCAAATTAATTCACTCTGGAAGGGGTGTGGTTAGCATGGCAAACAGTGGCCCACACACTAATGGTTCCCAGTTTTTCATCCTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTCGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCAGTTGATGATGATGACCGACCTCTTGAAGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACTGAACCAGATGAGGAAGAAGAGCAGGATAATGCCAAAGAGAAGAATGATGAAGATAATGATAAGGTTGGCTCATGGTATAGCAATCCTGGCGCTGGAATTTCTGAATCTGGAGGTACGGGGGTTGGCGGTGGTGTTGGGAAGTACTTGAAAGCTAGGAATGCTCCAGCTGAATCTGATACTGTTCACACCGGTACTGCCGTTGTAGGAAAGAAAAGAAAAGTGGAAGTTGCCAGTAGTGAATTTAAAGATTTTTCTGCATGGTGA 1785 0.4202 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCALTFTPFEFPVCTADGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIALNFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTKDDLITIQNPNALDSKVLLDFDHVKNSLKVDDEELQRMGSDPTYNINMSGDIKQMLQELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSLVKEDSKSNQNGEVKAPQAFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHVAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLRTTHGDLNIELHCDITPRTCENFITLCERGYYNGVSFHRNIRNFMIQGGDPTGTGKGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDDDRPLEEIKITSVTIFVNPYTEPDEEEEQDNAKEKNDEDNDKVGSWYSNPGAGISESGGTGVGGGVGKYLKARNAPAESDTVHTGTAVVGKKRKVEVASSEFKDFSAW 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00029 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 358 501 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 SUPERFAMILY RING/U-box 37 105 - -
Gabi3865g00029 594 CDD cyclophilin_RING 350 508 - -
Gabi3865g00029 594 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Gabi3865g00029 594 Gene3D - 330 515 IPR029000 -
Gabi3865g00029 594 SUPERFAMILY Cyclophilin-like 350 510 IPR029000 -
Gabi3865g00029 594 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Gabi3865g00029 594 MobiDBLite consensus disorder prediction 504 546 - -
Gabi3865g00029 594 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Gabi3865g00029 594 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 515 IPR044666 -
Gabi3865g00029 594 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Gabi3865g00029 594 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Gabi3865g00029 594 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Gabi3865g00029 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Gabi3865g00029 594 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00029 Gabi-Chr3865 305749 311034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00029 1 594 U-box Gene Family AT5G67530 75.249 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00029 K10598 - gmx:100819923 1031.55