Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00022 ATGATTGAAAATTTGTTAAATGAGGATTTTGAAGTGAAGTCCAAGAATTCTTCTGATGAAGCTCTTCGAAGATGGAGAAAACTATGCGGTGTCGTGAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTCACCAAGAGGAGCGAAGCTGCTAATATGCGTCGAACCAATCAGGAGAAGCTAAGGGTTGCAGTTTTGGTTTCCAAAGCCGCATTTCAATTTATCCAAGGTGTGCAACCAAGCGATTACAGTGTTCCAGAGGAAGTTAAAGCTGCAGGTTTTCAAATCTGTGGTGATGAATTGGGGTCCATTGTTGAAGGCCATGATGTAAAGAAGCTCAGATTTCATGGTGGGGTTAGTGGTATTGCACCAAAACTTTCTACATCAACCAATGAGGGGCTTAGCAGTGATACTGATTTACTGAATAGGAGACAACAGATATATGGAATCAATAAATTTACTGAAAGTGCAGTTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGGAGTATGTGCTTTTGTTTCTCTCATAGTTGGCATTGCAACGGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTTGTGACAGCAATTAGTGATTATCGCCAATCTTTACAATTTAAGGATTTAGACAAGGAGAAGAAGAAGATTTCCATTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCAGTGATGGTGAATTCTGAAAATCCATTCCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGCAAGATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTCAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTAAAATTGAATGGAGTGGCAACCATTATTGGGAAGATAGGTCTATTCTTCGCCGTTATTACTTTTGGAGTTTTGGTGCAAGGACTTGTGAACCATAAACTCCAACAAGGAAGCTTCTGGAGCTGGACTGGCGATGATGCGTTGGAGATGTTGGAATTCTTTGCAGTTGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAGGGTCTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAGATGATGAATGACAAAGCCCTTGTCCGGCATTTGGCAGCTTGTGAGACCATGGGGTCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGTATGAATAGCATGGAAGTGAGCAATAAGACTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTACAGTCAATATTTAATAATACAGGAGGAGAGGTTGTTATTAACAAACATGGAAAACATGAGATTTTAGGGACGCCAACCGACACTGCAATATTGGAGTTTGGCTTGTCTTTAGGTGGCGATTTTCAGGGAGAGCGACAGGCATGTAAACTTATTAAAGCTGAGCCATTCAACTCTACCAAGAAAAAAATGAGTGTAGTTGTGGAGCTCCCTGGTGGAGGTTTACGAGCCCACTGTAAAGGTGCTTCTGAAATAGTTCTGGCTGCTTGTGACAAAGTGCTCAACTCAAATGGTGAGGTTGTCCCCCTTGATGAAGAATCAACTAACCATCTTAAGAATACAATAAACCAGTTTGCTAGTGAGGCACTTAGAACCCTGTGCCTTGCCTATATGGAATTGGAAAATGGATTCTCTGATAAAGACCCCATTCCTGTTTTTGGATATACTTGCATAGGAGTTATTGGTATCAAAGATCCTGTTCGTCCCGGTGTTAAGGAGTCTGTAGCAGTATGTCGTTCAGCAGGAATAACAGTAAGAATGGTTACAGGCGACAACATCAATACTGCCAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGCCCAGACTTTAGAGAGAAGAGTCTGGAGGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACCTGCGCACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTATATATAAATATTCAGAAATTCGTACAGTTCCAGCTGACAGTTAATGTAGTTGCATTGATTGTGAACTTCACATCAGCCTGCTTGACAGGAACTGCGCCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCGCTCGCAACCGAACCTCCAAATGATGATTTAATGAAGCGTTCCCCTGTTGGAAGGAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAATCATTATATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGGAAATCAATCTTTTCACTTAACGGCCCCGATTCGGATCTGGTCTTAAACACTCTTATTTTCAACTCATTTGTATTATGTCAGGTTTTCAATGAGATAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATTGGAAAATTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTTCAAATCATAATAGTACAATACCTGGGAACCTTCGCAAACACAACACCTCTCACTCTGATACAGTGGTTATTTAGCTTATTCGTTGGATTTTTGGGCATGCCTATTGCTGCTTGCTTAAAGAAGATCCCTGTTCGAAGCACGTGA 3054 0.4201 MIENLLNEDFEVKSKNSSDEALRRWRKLCGVVKNPKRRFRFTANLTKRSEAANMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYSVPEEVKAAGFQICGDELGSIVEGHDVKKLRFHGGVSGIAPKLSTSTNEGLSSDTDLLNRRQQIYGINKFTESAVRSFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTAISDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFGVLVQGLVNHKLQQGSFWSWTGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSMEVSNKTSSLCSELPESAVKLLLQSIFNNTGGEVVINKHGKHEILGTPTDTAILEFGLSLGGDFQGERQACKLIKAEPFNSTKKKMSVVVELPGGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESTNHLKNTINQFASEALRTLCLAYMELENGFSDKDPIPVFGYTCIGVIGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSLEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKSIFSLNGPDSDLVLNTLIFNSFVLCQVFNEINSREMEEIDVFKGILENYVFVGVISATVFFQIIIVQYLGTFANTTPLTLIQWLFSLFVGFLGMPIAACLKKIPVRST 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00022 1017 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Gabi3865g00022 1017 FunFam Calcium-transporting ATPase 646 798 - -
Gabi3865g00022 1017 SUPERFAMILY HAD-like 451 858 IPR036412 -
Gabi3865g00022 1017 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi3865g00022 1017 Pfam Cation transport ATPase (P-type) 513 591 - -
Gabi3865g00022 1017 NCBIfam HAD-IC family P-type ATPase 724 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 NCBIfam HAD-IC family P-type ATPase 385 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 NCBIfam HAD-IC family P-type ATPase 545 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Gabi3865g00022 1017 Gene3D - 463 657 IPR023299 GO:0000166
Gabi3865g00022 1017 Gene3D - 17 77 - -
Gabi3865g00022 1017 SFLD C1.7: P-type atpase like 435 805 - -
Gabi3865g00022 1017 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Gabi3865g00022 1017 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Gabi3865g00022 1017 Gene3D - 450 798 IPR023214 -
Gabi3865g00022 1017 FunFam Calcium-transporting ATPase 463 657 - -
Gabi3865g00022 1017 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Gabi3865g00022 1017 FunFam Calcium-transporting ATPase 17 77 - -
Gabi3865g00022 1017 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Gabi3865g00022 1017 SFLD p-type atpase 435 805 IPR044492 -
Gabi3865g00022 1017 Pfam E1-E2 ATPase 237 431 - -
Gabi3865g00022 1017 Gene3D - 140 336 - -
Gabi3865g00022 1017 SMART Cation_ATPase_N_a_2 116 190 IPR004014 -
Gabi3865g00022 1017 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Gabi3865g00022 1017 Pfam Cation transporter/ATPase, N-terminus 118 185 IPR004014 -
Gabi3865g00022 1017 FunFam Calcium-transporting ATPase 215 336 - -
Gabi3865g00022 1017 PANTHER CATION TRANSPORTING ATPASE 59 1014 - -
Gabi3865g00022 1017 Gene3D - 168 1010 - -
Gabi3865g00022 1017 Pfam haloacid dehalogenase-like hydrolase 647 767 - -
Gabi3865g00022 1017 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Gabi3865g00022 1017 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Gabi3865g00022 1017 FunFam Calcium-transporting ATPase 770 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00022 Gabi-Chr3865 259617 265088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00022 2 1014 Primary Pumps ATPases AT4G37640 83.037 0.0 1746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00022 K01537 - gmx:100792691 1820.44