Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3865g00021 ATGATTGAAAATTTGTTAAATGAGGATTTTGAAGTGAAGTCCAAGAATTCTTCTGATGAAGCTCTTCGAAGATGGAGAAAACTATGCGGTGTCGTGAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTCACCAAGAGGAGCGAAGCTGCTAATATGCGTCGAACCAATCAGGAGAAGCTAAGGGTTGCAGTTTTGGTTTCCAAAGCCGCATTTCAATTTATCCAAGGTGTGCAACCAAGCGATTACAGTGTTCCAGAGGAAGTTAAAGCTGCAGGTTTTCAAATCTGTGGTGATGAATTGGGGTCCATTGTTGAAGGCCATGATGTAAAGAAGCTCAGATTTCATGGTGGGGTTAGTGGTATTGCACCAAAACTTTCTACATCAACCAATGAGGGGCTTAGCAGTGATACTGATTTACTGAATAGGAGACAACAGATATATGGAATCAATAAATTTACTGAAAGTGCAGTTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGGAGTATGTGCTTTTGTTTCTCTCATAGTTGGCATTGCAACGGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTTGTGACAGCAATTAGTGATTATCGCCAATCTTTACAATTTAAGGATTTAGACAAGGAGAAGAAGAAGATTTCCATTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCAGTGATGGTGAATTCTGAAAATCCATTCCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGCAAGATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTCAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTAAAATTGAATGGAGTGGCAACCATTATTGGGAAGATAGGTCTATTCTTCGCCGTTATTACTTTTGGAGTTTTGGTGCAAGGACTTGTGAACCATAAACTCCAACAAGGAAGCTTCTGGAGCTGGACTGGCGATGATGCGTTGGAGATGTTGGAATTCTTTGCAGTTGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAGGGTCTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAGATGATGAATGACAAAGCCCTTGTCCGGCATTTGGCAGCTTGTGAGACCATGGGGTCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGTATGAATAGCATGGAAGTGAGCAATAAGACTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTACAGTCAATATTTAATAATACAGGAGGAGAGGTTGTTATTAACAAACATGGAAAACATGAGATTTTAGGGACGCCAACCGACACTGCAATATTGGAGTTTGGCTTGTCTTTAGGTGGCGATTTTCAGGGAGAGCGACAGGCATGTAAACTTATTAAAGCTGAGCCATTCAACTCTACCAAGAAAAAAATGAGTGTAGTTGTGGAGCTCCCTGGTGGAGGTTTACGAGCCCACTGTAAAGGTGCTTCTGAAATAGTTCTGGCTGCTTGTGACAAAGTGCTCAACTCAAATGGTGAGGTTGTCCCCCTTGATGAAGAATCAACTAACCATCTTAAGAATACAATAAACCAGTTTGCTAGTGAGGCACTTAGAACCCTGTGCCTTGCCTATATGGAATTAGGCCCAGACTTTAGAGAGAAGAGTCTGGAGGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACCTGCGCACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTATATATAAATATTCAGAAATTCGTACAGTTCCAGCTGACAGTTAATGTAGTTGCATTGATTGTGAACTTCACATCAGCCTGCTTGACAGGAACTGCGCCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCGCTCGCAACCGAACCTCCAAATGATGATTTAATGAAGCGTTCCCCTGTTGGAAGGAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAATCATTATATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGGAAATCAATCTTTTCACTTAACGGCCCCGATTCGGATCTGGTCTTAAACACTCTTATTTTCAACTCATTTGTATTATGTCAGGTTTTCAATGAGATAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATTGGAAAATTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTTCAAATCATAATAGTACAATACCTGGGAACCTTCGCAAACACAACACCTCTCACTCTGATACAGTGGTTATTTAGCTTATTCGTTGGATTTTTGGGCATGCCTATTGCTGCTTGCTTAAAGAAGATCCCTGTTCGAAGCACGTGA 2832 0.4195 MIENLLNEDFEVKSKNSSDEALRRWRKLCGVVKNPKRRFRFTANLTKRSEAANMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYSVPEEVKAAGFQICGDELGSIVEGHDVKKLRFHGGVSGIAPKLSTSTNEGLSSDTDLLNRRQQIYGINKFTESAVRSFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTAISDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFGVLVQGLVNHKLQQGSFWSWTGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSMEVSNKTSSLCSELPESAVKLLLQSIFNNTGGEVVINKHGKHEILGTPTDTAILEFGLSLGGDFQGERQACKLIKAEPFNSTKKKMSVVVELPGGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESTNHLKNTINQFASEALRTLCLAYMELGPDFREKSLEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKSIFSLNGPDSDLVLNTLIFNSFVLCQVFNEINSREMEEIDVFKGILENYVFVGVISATVFFQIIIVQYLGTFANTTPLTLIQWLFSLFVGFLGMPIAACLKKIPVRST 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3865g00021 943 Pfam Cation transporting ATPase, C-terminus 764 937 IPR006068 -
Gabi3865g00021 943 Gene3D - 463 635 IPR023299 GO:0000166
Gabi3865g00021 943 NCBIfam HAD-IC family P-type ATPase 650 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00021 943 NCBIfam HAD-IC family P-type ATPase 386 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3865g00021 943 SUPERFAMILY HAD-like 627 727 IPR036412 -
Gabi3865g00021 943 Gene3D - 140 336 - -
Gabi3865g00021 943 FunFam Calcium-transporting ATPase 696 942 - -
Gabi3865g00021 943 PANTHER CATION TRANSPORTING ATPASE 59 629 - -
Gabi3865g00021 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 941 IPR023298 -
Gabi3865g00021 943 Gene3D - 450 462 IPR023214 -
Gabi3865g00021 943 Gene3D - 690 943 - -
Gabi3865g00021 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Gabi3865g00021 943 FunFam Calcium-transporting ATPase 215 336 - -
Gabi3865g00021 943 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Gabi3865g00021 943 SMART Cation_ATPase_N_a_2 116 190 IPR004014 -
Gabi3865g00021 943 FunFam Calcium-transporting ATPase 17 77 - -
Gabi3865g00021 943 Pfam E1-E2 ATPase 237 431 - -
Gabi3865g00021 943 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Gabi3865g00021 943 FunFam Calcium-transporting ATPase 463 643 - -
Gabi3865g00021 943 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Gabi3865g00021 943 PRINTS P-type cation-transporting ATPase superfamily signature 703 715 - -
Gabi3865g00021 943 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Gabi3865g00021 943 PRINTS P-type cation-transporting ATPase superfamily signature 679 698 - -
Gabi3865g00021 943 Gene3D - 168 449 - -
Gabi3865g00021 943 Pfam Cation transporter/ATPase, N-terminus 118 185 IPR004014 -
Gabi3865g00021 943 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 631 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi3865g00021 943 Pfam Cation transport ATPase (P-type) 513 591 - -
Gabi3865g00021 943 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 635 IPR023299 GO:0000166
Gabi3865g00021 943 Gene3D - 17 77 - -
Gabi3865g00021 943 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Gabi3865g00021 943 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Gabi3865g00021 943 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3865g00021 Gabi-Chr3865 259617 265088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3865g00021 632 940 Primary Pumps ATPases AT4G37640 86.408 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3865g00021 K01537 - gmx:100792691 1112.44