Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3857g00003 ATGGATGATGGCCGCCAACATGAGAACAGTAGGCATAAGATGGAATACTACAGAGGAGCACATTCTCTGTGGAATACAGATCCCCAGCATCAAGTGGAGCAGCCAAATGCACTAGTTATGAATAAGAAAATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGACAATGCCCTATTGGAACGGGACAATGCCCTTGCAGCCCTTCAAAATCGGTTCGATGGTGGAATTCAGAGTGGATCAAAACGGATGCACCATTCTTCAAATCATCAATCTAACATGACAGAAACTGCATACAGCACAAAGGATATGACAATAAGGGATGCCTCCTCAGTGACTGTTATAGCTTCTGAAGCTGTCAAATCTCATCAAACTAAGAGAACGAAGGAGAACAAGGTAATTAATTCTAAGGCATCAAAGCCACCTAACAAAGTAAAGAAAATGGGTGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAAATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGGTTGCATTTGATGAAACTATAATGCCAGTCCCAGTTTGCACATGCACTGGAGTACCACGGCAGTGCTACAAATGGGGTAATGGTGGATGGCAGTCATCTTGTTGTACCACCACATTGTCAATGTATCCACTACCACAGCTTCCAAACAAGCGCCATGCGCGCATTGGAGGACGAAAGATGAGTGGAAGTGTCTTTACAAGACTGCTCAGTAGGTTGGCTTCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGACTACTGGGCCAGACATGGAACAAATCGCTACATTACTATCAAGTAG 933 0.4448 MDDGRQHENSRHKMEYYRGAHSLWNTDPQHQVEQPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALAARDAALRQRDEALAQRDNALLERDNALAALQNRFDGGIQSGSKRMHHSSNHQSNMTETAYSTKDMTIRDASSVTVIASEAVKSHQTKRTKENKVINSKASKPPNKVKKMGEDLNRQASSEGTKIKSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLASEGHDLSIPLDLKDYWARHGTNRYITIK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3857g00003 310 Coils Coil 53 94 - -
Gabi3857g00003 310 MobiDBLite consensus disorder prediction 154 180 - -
Gabi3857g00003 310 PANTHER - 14 310 IPR010409 -
Gabi3857g00003 310 Pfam GAGA binding protein-like family 1 310 IPR010409 -
Gabi3857g00003 310 SMART GAGA_bind_2 1 310 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3857g00003 Gabi-Chr3857 27509 32328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3857g00003 1 310 BBR or BPC Transcription factor family AT2G21240 57.460 1.13e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gabi3857g00003 GAGA_bind 3.7e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3857g00003 - - gmx:100813103 545.814