Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3857g00002 ATGACACTACCCGAGACCGAAACCGAAAACGAAACCCATCATCACTTGAATGTCTCGATTGAGCTCCTCTCCTCTGTTCTTCATGAAATCCCCAAAATCCAAAGCTTCAAAGGAAAGTGGTCCCTCATCTCAGCCAAACTCACCCATCTCCAAACCCAACTCATTAATCCCGATTTCTTCTCTAACTGCTCCTCCAACCCTCTCTCCCTCCACCTTCTCCGCTCCCTCTCCCTAACCCTTCACGACGCCGTTTCCCTCGCCATAGAGTGCCACTCCCCCAACCCCTCCCAGGGCAAGCTCAAGACGCAGAGCGACCTCGACTCCCTCCTCTCCACCCTCCACCGCCACGTCACCGACTGCGACATTCTCTTCCGTACCGGACCCGAACCCACCAACAACCTCATTACCCGCTTGCAAATCGGGTCACTCGACTCCAGAAATTCCGCCATGGACTCCTTGCTGGGTTTGCTCCATGAGGACGATAAGAGTGTCATGATCACCGTGGCGCAGGGTGTGGTTCCCGTGCTCCTGCGCTTGCTTGATTCATCCTCCTCTTCCGAGATTAAGGAAAAGGCCGTTTCAGCCATTTCAAGAGTTTCAGTCGTGGATAGCACCAAGCACGTTCTCATCACGGAGGGTTTGTTGCTATTGAATCACTTGCTCCGAGTTCTTGACTCGGGAAGTGGGTTCGCGAAAGAGAAGGCTTGCGTTGCGCTTCAAGCACTGAGTTTCTCGAAGGAGAACGCCATGGCGATCGGGTCAAGGGGTGGAATCTCGTCTCTGTTGGAGATTTGCCAGGCTGGCACGCCCTGTTCGCAAGCATTCGCAGCTGGGGTTCTCAGAAATCTCGCGGCTTTTGAAGAAATCAAGGAGAACTTCATCGAGGAAAACGCGGTTCTTGTTCTTTTGGGGGTCGCTTCTTCGGGAACCGCATCGGCGCAAGAGAATGCAATTGGGTGTTTGTCCAATTTGGTGTCGGAGGAAGAAAGTTTGAAGCTTTTGGTCGTTAAGGAAGGTGGGGTCGAGTGTTTGAAGAATTTCTGGGACTCGGGTGGGAGTCTCGAGGTTGCGGTTGAGTTTCTGATGAACTTGGCTTCGAATTCGAAGGTTGCTGAGGTTCTCGTTTCTTATGGGTTTGTGCCCCGCGTTGTTGGGGTGTTGAATTGTGGGGTGATGGCGTTGAGAATTTCTGCGGCTAGGGCTGTTTATGCTTTGGGGTTCAGCAGCACAAAGGCGAGGAAAGAGATGGGTGAATGTGGGTGTGTTACCCCTTTGATTAACATGTTGGATGGTAAGGGTGTGGAAGAGAAAGAATCAGCTGCGAAAGCCTTATCGATGTTGATGTTGCATGCAGGGAATAGAAGGGTTTTCCGTAAGGATGAGAGGGGCATAGTGAGTGCTGTTCAGCTCTTGAATCCTTTGTTGCAGAATTTGGATAAGAAATACCCTGTTTCGTTGTTGGCCTCGCTCGTTCATTCCAAGAAGTGTAGGAAGCAAATGGTTGCTGCGGGTGCTTGTCTATATGCGCAGAAACTTGTTGACATGGATGTTGAGGGGTCCAAGAAACTCTTGGAAAGCCTTGGTCGTGGTAAGATTTGGGGTATTTTTGCAAGACCCTAA 1620 0.5105 MTLPETETENETHHHLNVSIELLSSVLHEIPKIQSFKGKWSLISAKLTHLQTQLINPDFFSNCSSNPLSLHLLRSLSLTLHDAVSLAIECHSPNPSQGKLKTQSDLDSLLSTLHRHVTDCDILFRTGPEPTNNLITRLQIGSLDSRNSAMDSLLGLLHEDDKSVMITVAQGVVPVLLRLLDSSSSSEIKEKAVSAISRVSVVDSTKHVLITEGLLLLNHLLRVLDSGSGFAKEKACVALQALSFSKENAMAIGSRGGISSLLEICQAGTPCSQAFAAGVLRNLAAFEEIKENFIEENAVLVLLGVASSGTASAQENAIGCLSNLVSEEESLKLLVVKEGGVECLKNFWDSGGSLEVAVEFLMNLASNSKVAEVLVSYGFVPRVVGVLNCGVMALRISAARAVYALGFSSTKARKEMGECGCVTPLINMLDGKGVEEKESAAKALSMLMLHAGNRRVFRKDERGIVSAVQLLNPLLQNLDKKYPVSLLASLVHSKKCRKQMVAAGACLYAQKLVDMDVEGSKKLLESLGRGKIWGIFARP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3857g00002 539 SMART arm_5 160 201 IPR000225 GO:0005515
Gabi3857g00002 539 SMART arm_5 286 326 IPR000225 GO:0005515
Gabi3857g00002 539 SMART arm_5 409 449 IPR000225 GO:0005515
Gabi3857g00002 539 SMART arm_5 367 407 IPR000225 GO:0005515
Gabi3857g00002 539 SMART arm_5 245 285 IPR000225 GO:0005515
Gabi3857g00002 539 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 537 - -
Gabi3857g00002 539 SUPERFAMILY ARM repeat 133 484 IPR016024 -
Gabi3857g00002 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 171 214 IPR000225 GO:0005515
Gabi3857g00002 539 Gene3D - 352 527 IPR011989 -
Gabi3857g00002 539 Pfam Armadillo/beta-catenin-like repeat 168 198 IPR000225 GO:0005515
Gabi3857g00002 539 Gene3D - 131 351 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3857g00002 Gabi-Chr3857 14283 16181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3857g00002 134 398 U-box Gene Family AT2G23140 28.731 3.49e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3857g00002 - - qsa:O6P43_030678 655.981