Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3850g00001 ATGGGAAGTCATATACTTATCAATAAGATTATGATACATCTTTGGTGCGTTGCTTGGATGTGCATAAGTGTATGCACTGCTCACCTGTACTATGACTCTTCTGATTGTAATTCAAATGAAACATTCCTAGGGTCAAGGTACAGTTGCAATTCAACGCAGGATTCATGCAAAACATTCTTGGTGTATAGAGCTAATAAGCATTTCCAAACAATTTCAGATATCTCAAAGCTCTTCAACATGAACACTGATGAGGTGCTTCAAATAAACAACCTTACATCATCTTTTCAGGTACTCAAACAAGGTAAAGAGGTTCTTCTTCCTGTAGTTTGTACCTGCTCTGGCCAATTTTATCAAGCCAGTTTCAGCTATAAAGTCCCTGAAAGTACAATATTTTCCAAGATTGCTTGTGGGGTTTTTGAAGGGTTGCTGAAAGCTATCACACTGGCTGAGGAAAACCTTCCACAAGGTAATAAGCCCAAAGCTGGTTATGAGCTTAATGTGCCTCTAAGATGTGCATGTCCTAACAATTTCACCAGTAGCAAGAGGGTGAAGTACCTTGTTACATACCCTATAATACTAGGAGATGATTCAGATAAATTGACTAAGAAATTTGGCATGTCATTTGAAGATTTCTTGGCAGTTAATCACTTGGATCCCAGGTCAACTCTTTTCCCTGAGACAACTGTTTTAATTCCATTAAGGGATGGTCCAATCAGAATGTTTGACATTCCAGATTCTCCTTCTCCACCTCCTGGTTTTCTTCCCACAAATCCAGTGGCTAATACACAAGAATCTACACAGCCATCAAATTTGTCTATTGCAGGACCTATTATAGGATTTTTGTTGATCATAACATTGCTTGCAAGTGGACTTTACATGAAGAGAGTGAGAAAAAGTGATGTTGTCCACTCCTTCAATATAACAAACTTCAATAACTTGTGGTCACCAATTAGAAGCTCTCCTATATCTACCTTAACAGGTAGAAGCTCTACAACTTCGTGTCTATCTCCTGATATTCTTGCTGGAATAAAGTACTGCTTGCTTAATTACCGCATAGAAGAGCTTGAAAAGGCCACCAATAATTTCAGTGAAGAAAACAAGATTGGTCATGATTTAGTCTATAAGGGCTTAGTCAGTAATCTAGAGGTGATGATAAAAAGGATGAGGTTTGAAGACACAAGCAAGGTAATTGATTTACATTCAAAAATCAATCATGTTAATATTGTGAACTTAATTGGTGTTTCTTATGGTGAGAGCAATGCTTCATGGTCTTATCTAGTTTTTGAGTTGCCTAAAAATGGCAGCTTGAGGGACTGCATATCTGATCCATACAATGCTCTAAACTGGGACAGAAGGACACAAATAGCCTTTGATATTGCAACATGTCTTTACTATTTACATTGCTGTTTTTTTCCTTCCTATGCTCACATGAATGTCAGTAGTAGAAATGTTTTCATAACAGCAAATTGGAGGGGGAAATTGGCAGATGTTGGTAGGGCATTGGCTAACAAGTACCTCATGCATGGCTTAGTTTCTGAAAAGGTTGATATTTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATATCAGGAAGAGACAACTTTGATGGAAAATCAGTCAAAGATTCCCTTGGATTTTTGTTGGGGGAAGCCAGTGAAGGGGGTTGTTTTGAAGGATTAAGGAGTTTCATGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTATGTTTGTCTTTTTTAGCAAAGGATTGTGTGGCAGATGATCCTCTGCATAGGCCAACCATGGATGATATCATGAAAGTCCTCACAAAAATGGTTTAG 1824 0.3816 MGSHILINKIMIHLWCVAWMCISVCTAHLYYDSSDCNSNETFLGSRYSCNSTQDSCKTFLVYRANKHFQTISDISKLFNMNTDEVLQINNLTSSFQVLKQGKEVLLPVVCTCSGQFYQASFSYKVPESTIFSKIACGVFEGLLKAITLAEENLPQGNKPKAGYELNVPLRCACPNNFTSSKRVKYLVTYPIILGDDSDKLTKKFGMSFEDFLAVNHLDPRSTLFPETTVLIPLRDGPIRMFDIPDSPSPPPGFLPTNPVANTQESTQPSNLSIAGPIIGFLLIITLLASGLYMKRVRKSDVVHSFNITNFNNLWSPIRSSPISTLTGRSSTTSCLSPDILAGIKYCLLNYRIEELEKATNNFSEENKIGHDLVYKGLVSNLEVMIKRMRFEDTSKVIDLHSKINHVNIVNLIGVSYGESNASWSYLVFELPKNGSLRDCISDPYNALNWDRRTQIAFDIATCLYYLHCCFFPSYAHMNVSSRNVFITANWRGKLADVGRALANKYLMHGLVSEKVDIFAFGVVLLELISGRDNFDGKSVKDSLGFLLGEASEGGCFEGLRSFMDPNLKDYSLPEALCLSFLAKDCVADDPLHRPTMDDIMKVLTKMV 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3850g00001 607 Gene3D Transferase(Phosphotransferase) domain 1 432 607 - -
Gabi3850g00001 607 Pfam Protein tyrosine and serine/threonine kinase 391 498 IPR001245 GO:0004672|GO:0006468
Gabi3850g00001 607 SUPERFAMILY Protein kinase-like (PK-like) 345 603 IPR011009 -
Gabi3850g00001 607 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 25 606 - -
Gabi3850g00001 607 ProSiteProfiles LysM domain profile. 187 231 IPR018392 -
Gabi3850g00001 607 Gene3D Phosphorylase Kinase; domain 1 344 429 - -
Gabi3850g00001 607 Pfam LysM domain 70 104 IPR018392 -
Gabi3850g00001 607 Pfam LysM domain 200 232 IPR018392 -
Gabi3850g00001 607 ProSiteProfiles Protein kinase domain profile. 281 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3850g00001 Gabi-Chr3850 6364 8247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3850g00001 23 607 Receptor kinase-like Gene Family AT2G23770 29.011 5.03e-65 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3850g00001 PK_Tyr_Ser-Thr 4.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3850g00001 - - gmx:100818937 914.45