LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3848g00001	ATGGCTGGGAAGGAAGAGAATCGAATATTTGTTGGAGGGTTGTCTTGGGACGTTACGGAGCGTCAGCTCGAGCATGCCTTTGACCGTTACGGCAAAATTCTCGAATGTCAGATCATGATGGAAAAAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACGTTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAATAAGGCACAGCCCAAGATGGGGGGTGATGATGTAGACCATGGTTACAGGGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGGGTTGGAGAGAGGATAGGACAGGATGACTGCTTCAAATGTGGGCGTCCGGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGAGGTGGTCGTGGTCGGGGTGGTAGTTCATTTTCTTCACGTCCTAGGTTTGGTGGTGCTGGTGGACATGGGGATCGCCTTAGCGGTGAACGCGATCGATACATTGATGATCGTTATGACGGAGGACGTTATGGAGATAGGGATCGTCTTGACAGTCGGGACTACAAATACAGCGGCCGTGATCGCTATACTAGTGACAGGTATCCAACTAGCGGAGATCGATATGGAGGTGGCTCAGATCATTACCCTCAAAATGGTTATGGCAAGGAAAGAGGCTATGACCGTTATGGTGGTGCACGAGGTGGCGATAGGTATGGAAGTGGAATGGCAGCTCGAGATGAAGGAAGGAGCTATAGGGGTAGGTCCGGTCCATATGACCGTCCAAGCAGGGGTGGTCGTCCATCATCTTTTGACCGCTACTGA	834	0.5168	MAGKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMEKDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDHGYRGGYSSGGRGSYGVGERIGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGSSFSSRPRFGGAGGHGDRLSGERDRYIDDRYDGGRYGDRDRLDSRDYKYSGRDRYTSDRYPTSGDRYGGGSDHYPQNGYGKERGYDRYGGARGGDRYGSGMAARDEGRSYRGRSGPYDRPSRGGRPSSFDRY	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3848g00001	277	FunFam	glycine-rich RNA-binding protein RZ1C	1	116	-	-
	Gabi3848g00001	277	SUPERFAMILY	Retrovirus zinc finger-like domains	105	138	IPR036875	GO:0003676\|GO:0008270
	Gabi3848g00001	277	ProSiteProfiles	Zinc finger CCHC-type profile.	119	133	IPR001878	GO:0003676\|GO:0008270
	Gabi3848g00001	277	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Gabi3848g00001	277	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	4	269	-	-
	Gabi3848g00001	277	Gene3D	-	1	114	IPR012677	-
	Gabi3848g00001	277	MobiDBLite	consensus disorder prediction	244	260	-	-
	Gabi3848g00001	277	Gene3D	-	115	143	-	-
	Gabi3848g00001	277	MobiDBLite	consensus disorder prediction	135	277	-	-
	Gabi3848g00001	277	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Gabi3848g00001	277	MobiDBLite	consensus disorder prediction	162	205	-	-
	Gabi3848g00001	277	Pfam	Zinc knuckle	119	133	IPR001878	GO:0003676\|GO:0008270
	Gabi3848g00001	277	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Gabi3848g00001	277	SMART	c2hcfinal6	118	134	IPR001878	GO:0003676\|GO:0008270
	Gabi3848g00001	277	SUPERFAMILY	RNA-binding domain, RBD	4	109	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3848g00001	Gabi-Chr3848	14900	20710	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3848g00001	9	88	C2H2 Transcription Factor Family	AT2G19380	45.000	2.19e-15	73.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3848g00001	-		-	gmx:100809519	413.69