Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3847g00002 ATGACAGCCTGCTTGAAGCCACCTAAGCTACCTTCCAATGAAGATGACTCTGTGATACTCTTTTCAAATTCTAATTCTCCTGAAGAGTCCACCAGTCCTTCTTCATCTTTCTACCACTCACCACCACCAGCACTGCATCAATTCAGAACTGCATACAAACTTTCTGTCAGAAATCTCTCCTATACTTTGCACCCACATAAGACCACTCCCTTTTCATTTCGCCACCTGACTAAAAAACCAAAGCCTGTAAATATACTCGAGTCAGTCTCTTTTGTTGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGTACAGGGAAGTCTACTCTTCTTCGAATAATCACTGGGAGGGTAAAAGATAAAGATTTTGATCCTAAAAGTATCTCAATCAATGATCAGCCGATGACAAGTCCAGCTCAGTTGAGGAAGATATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTCTTTTAACTGTGAAAGAAACTCTATTGTTTAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAAGGATAGAGAATTGAGGGTAGAAAGCTTGATGCAAGAGCTAGGCCTTTTTCATGTAGCAGATAGTTTTGTTGGGGATGAAGAGAATAGAGGGATATCTGGTGGAGAGAGGAAGAGGGTATCAATTGGAGTTGATATGATTCACAATCCTCCAATTTTACTCTTAGATGAGCCAACATCAGGCCTAGACAGCACCTCGGCTCTGCAAGTGATAGAGCTTCTGTCATCAATGGTTAAAGCAAAGCAAAGGATGGTGGTTCTGTCAATCCACCAACCCAGTTATAGAATATTGCAGTATATTTCTAAGTTCTTGATCCTTTCTCATGGTTCAGTTGTTCACAATGGTAGTCTAGAATTGCTAGAGGAAACCATAAGTAAATTGGGATTTCAAATTCCATTACAACTGAATGCTTTAGAATTTTCCATGGAAATTATACACAGGTTAGAAGATTCTAGTTTCAGATATGACACTTTCACCATTGAGGAAAAAGAGCCATTTCCAAACCCTATGTGGCCAGAGGAAGAAAACGGTGGAGTCCAATCTCAATATAGCGGGGAAAGTTTTGGCAATCTTTGTTATGTATACTTGGTTGAGATATTGTTTCTCTGCTCAAGATTTTGGAAGATCATTTATAGAACAAAGCAGCTTTTCTTGGCCAGAACAATGCAAGCACTAGTTGGTGGATTTGGGTTAGGAAGTGTTTATATTAAGATAAGGAAGGAAGAAGGAGGAGTTGCAGAAAGGTTAGGCTTGTTTGCATTTAGTCTTAGTTTTCTTCTGTCTTCAACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAGTGTTCTAATGAAAGAAGCCTCAAGGGGAGCCTATAGAATTTCCTCTTACATGATTGCCAACACTATTGTCTTCCTTCCTTTCTTGTTTGTAGTATCTGTACTTTTTGCAGTTCCTGTGTATTGGCTTGTAGGACTCAATCCTTCCCTTACTGCCTTCACCTTCTTCACTTTTGTGGTATGGCTCATTGTGCTCATGGCAAGTTCTCTAGTACTCTTTTTAAGTGCAGTCTCTCCTGATTTCATCACAGGGAATTCCCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCTAAGGAGAGCATTCCAAAATATTGGATTTTCATGTACTATGTGTCCCTCTATAGATACCCTTTGGATGCACTCCTCACAAATGAGTATTGGAATGTTAGAAATAAGTGTTTCTCACATCAAACAGAGGGCTCCCAGTGTTTGATTACTGGCTTTGATGTGTTGAAGAGTAGAGGACTTGAAAAGGATAACAGGTGGATGAATGTGGGAATAATGCTAGGATTCTTTGTATTCTATCGTGTGCTTTGTTGGGTAATACTTGCTCGAAAGGCCTCCAAGACAACAATATAA 1959 0.4017 MTACLKPPKLPSNEDDSVILFSNSNSPEESTSPSSSFYHSPPPALHQFRTAYKLSVRNLSYTLHPHKTTPFSFRHLTKKPKPVNILESVSFVARSSEIVAVVGPSGTGKSTLLRIITGRVKDKDFDPKSISINDQPMTSPAQLRKICGFVAQEDNLLPLLTVKETLLFSAKFRLKEMTPKDRELRVESLMQELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSMVKAKQRMVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLELLEETISKLGFQIPLQLNALEFSMEIIHRLEDSSFRYDTFTIEEKEPFPNPMWPEEENGGVQSQYSGESFGNLCYVYLVEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKIRKEEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTIVFLPFLFVVSVLFAVPVYWLVGLNPSLTAFTFFTFVVWLIVLMASSLVLFLSAVSPDFITGNSLICTVLGAFFLFSGYFIPKESIPKYWIFMYYVSLYRYPLDALLTNEYWNVRNKCFSHQTEGSQCLITGFDVLKSRGLEKDNRWMNVGIMLGFFVFYRVLCWVILARKASKTTI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3847g00002 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 312 IPR003439 GO:0005524
Gabi3847g00002 652 MobiDBLite consensus disorder prediction 16 40 - -
Gabi3847g00002 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 295 IPR027417 -
Gabi3847g00002 652 Pfam ABC transporter 86 239 IPR003439 GO:0005524
Gabi3847g00002 652 Pfam ABC-2 type transporter 378 586 IPR013525 GO:0016020|GO:0140359
Gabi3847g00002 652 Gene3D - 71 324 IPR027417 -
Gabi3847g00002 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 637 - -
Gabi3847g00002 652 FunFam ABC transporter G family member 23 77 310 - -
Gabi3847g00002 652 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524|GO:0016887
Gabi3847g00002 652 SMART AAA_5 95 297 IPR003593 GO:0016887
Gabi3847g00002 652 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3847g00002 Gabi-Chr3847 18920 20878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3847g00002 83 299 Calmodulin-binding Proteins AT2G36910 28.194 2.90e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3847g00002 K05681 - gmx:100777652 1095.88