Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3846g00003 ATGGGAAAACATATCAACATGGAAAATGATGCTCAGGACAATTCCTTTGCAACAATATCCTCCACTTCCACAACCATTCCCACCAACTTTACTGACACCAAAACTTCTACAACATCCTCCTCCTCCTCCTCCTCCTCAACAACAACATCATCTTCTACTTCAAATTCTAATTCATCAACCAAGCAAGACTCAAAAACTCCTTCAAATGATTCAAATTCAAGCACAAAGAAGAGGCAGAGAAGTGAAAGTGAAAGTAGCAAGCACCCAACATATAGAGGAGTAAGAATGAGAAGTTGGGGCAAATGGGTGTCTGAGATTAGAGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACTCTACTTCAGAAATGGCAGCAAGAGCACATGATGTAGCTGCCTTAGCTATCAAAGGCAATTCAGCATACCTCAATTTCCCCGAATTGGCTAAAGATCTTCCAAGGCCAAATAGCACATCTCCTAAGGATATTCAAATTGCAGCTGCAAAAGCAGCAAACACTGCTTTTGAAGATGTTAAGCAATGTCAAGCTGAAGCAGAACCAAGCCAAACAGAACAAGCTTCTTCTTATTCAACTCTATCCATTGACAATACTCAAGAGTCTTCAAATTCTCCTTCTACCAAAGATGATGACACATTGTTTGACTTACCAGATCTTTTCCCTGATGAAAACCATGGACTTCGCTCCTACAACTCTTCTTCTTGGCATTTATGTGCTGTTAATAGTGGATTCCGCCTTGAGGAGCCATCTTTTTGGGAGAACTACTAG 789 0.4056 MGKHINMENDAQDNSFATISSTSTTIPTNFTDTKTSTTSSSSSSSSTTTSSSTSNSNSSTKQDSKTPSNDSNSSTKKRQRSESESSKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYSTSEMAARAHDVAALAIKGNSAYLNFPELAKDLPRPNSTSPKDIQIAAAKAANTAFEDVKQCQAEAEPSQTEQASSYSTLSIDNTQESSNSPSTKDDDTLFDLPDLFPDENHGLRSYNSSSWHLCAVNSGFRLEEPSFWENY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3846g00003 262 MobiDBLite consensus disorder prediction 186 222 - -
Gabi3846g00003 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 69 230 - -
Gabi3846g00003 262 FunFam Ethylene-responsive transcription factor 2 89 148 - -
Gabi3846g00003 262 MobiDBLite consensus disorder prediction 186 217 - -
Gabi3846g00003 262 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Gabi3846g00003 262 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Gabi3846g00003 262 MobiDBLite consensus disorder prediction 75 91 - -
Gabi3846g00003 262 MobiDBLite consensus disorder prediction 1 97 - -
Gabi3846g00003 262 MobiDBLite consensus disorder prediction 8 74 - -
Gabi3846g00003 262 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Gabi3846g00003 262 SUPERFAMILY DNA-binding domain 90 148 IPR016177 GO:0003677
Gabi3846g00003 262 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Gabi3846g00003 262 Gene3D AP2/ERF domain 90 148 IPR036955 GO:0003700|GO:0006355
Gabi3846g00003 262 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
Gabi3846g00003 262 Pfam AP2 domain 89 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3846g00003 Gabi-Chr3846 30742 31533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3846g00003 78 258 AP2-EREBP Transcription Factor Family AT2G44940 53.846 8.70e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3846g00003 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3846g00003 - - gmx:100801129 305.449