Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3844g00001 ATGGAATCCCCCATAGAGGAGCATGCTGCTAAACTACTTCAAGCTCAAACCCATATATTCAATCACATTTTTGGCTTCATAAACTCCATGTCCCTTAAATGCGCAATTGAGTTATGCATACCAGATGTCATACACAAGTATGGCCAACCCATGCCACTCTCACAACTCATTGCTTCACTACCAATCCACCCCTCCAAAACTGGAAGCATGCATCGCTTGATGCGAATTTTGACCCATTCTGGTTTCTTCTTTCAACATAATGTTACTGAAAATGAGCTAGAAGTGAGGTATGGGCTAACCGATGCATCTAGATTACTACTTAATGATCAACCCTTGAGCATGACATCTTTCTTGCATTTCATACTTGACCCAACATTGGTAAAGCCATGGTATCAATTTTCTACATGGTTCAAAAATGATGATCCTACTCCATTTTACAAGGAAAATGGGATGGCATTTTGGGATTATGCTGGCCATGGCCATGAACCCAAACTTAATCACTTTTTCAACGATGCCATGGCTAGTGATGCTCGATTGCTTTCCAATGTGGTGATTGAGAAGTGCAAAGGGGTGTTCATGGGATTGGAGTCATTAGTTGATGTTGGGGGAGGCACAGGGACTATGGCAAAGGCCATTGCCAAGTCATTCCCACAATTGGAGTGTATTGTATTTGATCTCCCACGTGTTGTTGATGGCTTGCAAGGATGTGGGAATCTAAAATATGTTGGAGGTGACATGTTTGAGGCAATTCCCCCTGCCGATTCCATTATATTGAAGTGGATATTGCATAACTGGAACGATGAGGAATGCCTGAAAATACTGAAGAAATGCAAGGAGGCAATCGCTAGAAAAGGCAAAGAAGGGAAGATGATAATCATAGACGTGGTGATAGGGAATGAGAAGGGTGATAATGAATTAGCTGAAACGAAGTTTTTGTATGATATGGAGATGATGGCGTTGGTCACTGGAAAAGAGAGGAATGAGAAAGAATGGGCCAAGCTCTTTTTCTCTGCTGGTTTCAGTGACTACAAGATAACTCCAGTCCTAGGTTTGAAGTCTCTCGTTGAGGTTTATCCCTAG 1080 0.4213 MESPIEEHAAKLLQAQTHIFNHIFGFINSMSLKCAIELCIPDVIHKYGQPMPLSQLIASLPIHPSKTGSMHRLMRILTHSGFFFQHNVTENELEVRYGLTDASRLLLNDQPLSMTSFLHFILDPTLVKPWYQFSTWFKNDDPTPFYKENGMAFWDYAGHGHEPKLNHFFNDAMASDARLLSNVVIEKCKGVFMGLESLVDVGGGTGTMAKAIAKSFPQLECIVFDLPRVVDGLQGCGNLKYVGGDMFEAIPPADSIILKWILHNWNDEECLKILKKCKEAIARKGKEGKMIIIDVVIGNEKGDNELAETKFLYDMEMMALVTGKERNEKEWAKLFFSAGFSDYKITPVLGLKSLVEVYP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3844g00001 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 357 IPR029063 -
Gabi3844g00001 359 Gene3D - 3 106 IPR036388 -
Gabi3844g00001 359 Pfam O-methyltransferase domain 130 341 IPR001077 GO:0008171
Gabi3844g00001 359 PANTHER O-METHYLTRANSFERASE 12 344 IPR016461 GO:0008168
Gabi3844g00001 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Gabi3844g00001 359 FunFam O-methyltransferase ZRP4 108 359 - -
Gabi3844g00001 359 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gabi3844g00001 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Gabi3844g00001 359 Gene3D Vaccinia Virus protein VP39 108 359 IPR029063 -
Gabi3844g00001 359 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Gabi3844g00001 359 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3844g00001 Gabi-Chr3844 23648 24989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3844g00001 30 346 Monolignol Biosynthesis Gene Families AT5G54160 34.365 1.69e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3844g00001 - K16040 gmx:100793263 548.51