Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3843g00007 ATGGCGACACCGCAAGCGATGGGACCACCGGGAAATCCAATGTTGGACGGAGGAGGAGCAGTGCAACCGCCAGGGACGGATATGACCGGAATATGCTTCAGGGACCAGCTGTGGCTGAACACGTACCCACTGGATCGGAACCTTGTTTTCGATTACTTCGCCTTGTCCCCTTTCTACGATTGGACCTGCAACAATGAACAGCTCCGAATGCGCTCTGTTCACCCACTCGACCTCTCTCAACTCTCGAAAATGACTGGCACAGAGTATATGCTCAGTGAAGTAATGGAGCCTCACCTTTTTGTTATTCGCAAACAAAAGAGAGATAGCCCTGACAAAGTTACACCAATGCTTGCATATTATATCTTGGATGGTTCAATATACCAGGCTCCACAGCTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTCTATTATATACAAAAGGCCTTTACTACAGCCGCTTCAAAGTTGGAGAAGATAGGATACGTTGATTCTGAAAATGAGACTGCATTGCTGGAATCAAAGGTTGGTAAGGAGACAATTGACTTAAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTACAACGCAAGCTACCACCAGCTCCACCTCCACCACCATTTCCAGAAGGGTATGTTCCACCTCAAACAGCAGAAACCGAGAAAGTTACTGAAACTCAGGAAGCTGTAGAGTCGCAAGCTCCTATTGTTGATCCCATAATTGATCAAGGACCTGCAAAAAGAATGAAATTTTGA 762 0.4593 MATPQAMGPPGNPMLDGGGAVQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYVDSENETALLESKVGKETIDLKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPQTAETEKVTETQEAVESQAPIVDPIIDQGPAKRMKF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3843g00007 253 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3843g00007 253 FunFam Mediator of RNA polymerase II transcription subunit 6 25 154 - -
Gabi3843g00007 253 PIRSF MED6_meta/plant 17 253 IPR016820 GO:0003712|GO:0006357|GO:0016592
Gabi3843g00007 253 Gene3D Mediator complex, subunit Med6 25 154 IPR038566 -
Gabi3843g00007 253 PANTHER MED-6-RELATED 14 253 IPR007018 GO:0003712|GO:0006357|GO:0016592
Gabi3843g00007 253 MobiDBLite consensus disorder prediction 200 253 - -
Gabi3843g00007 253 MobiDBLite consensus disorder prediction 200 215 - -
Gabi3843g00007 253 Pfam MED6 mediator sub complex component 31 156 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Gabi3843g00007 Med6 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3843g00007 K15128 - gmx:100792248 443.351