Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00049 ATGGCGGTCAAACCTACCAAGGCCGAGAAGAAGGTCACGTACGATGCGAAGCTGTGCAAGCTCTTGGACGAGTATTCTCAGATCCTTGTGGTGAACGCCGACAACGTCGGATCCAACCAGCTGCAGGACATCCGCAAGGGCCTCCGTGGCGACACGGTGGTGCTCATGGGAAAGAACACCATGATGAAGCGCTCCGTTAGGATTCATGCTGAGAACTCAGGCAACAATGCCTATCTCAACCTTATCCCTCTTCTTGTCGGCAATGTGGGGTTGATTTTCACAAAAGGTGACTTGAAGGAGATTAGCGAAGACCTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGCGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACTGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTTGCCCTGTGGAACTCATCAAGAAGGGAGACAAGGTCGGCTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTTCTCATATGGTCTTGTGGTGCTTTCGGTTTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTAGTGAGGATGACCTCGTTGAAAAGTTTGGTATTGGTGTCTCAATGGTTACTTCACTTTCGTTGGCGATCTCGTACGCCACACTTGCAGCTGCACCGCATATGTTTGTCAATGCATATAAGAACGTTCTTGGTGTAGCAGTTGAGACAGAATATTCTTTCCCTCGGGCAGACAAGGTTAAGGAGCTCTTGCAGGACCCAAGTAAATTTGCTGTAGCTGCTTTTGCCGCAACTGCTGCAAATTCTGGTGCTTCCCAAGCTGCTGCTGCCGAGGAAGAGGAAAAGAAAGAAGAGCCAGTCGAAGAATCCGACAATGACATGGGTTTCAGTTTGTTTGACTAA 966 0.4876 MAVKPTKAEKKVTYDAKLCKLLDEYSQILVVNADNVGSNQLQDIRKGLRGDTVVLMGKNTMMKRSVRIHAENSGNNAYLNLIPLLVGNVGLIFTKGDLKEISEDLAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIICPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLSEDDLVEKFGIGVSMVTSLSLAISYATLAAAPHMFVNAYKNVLGVAVETEYSFPRADKVKELLQDPSKFAVAAFAATAANSGASQAAAAEEEEKKEEPVEESDNDMGFSLFD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00049 321 Gene3D - 6 209 IPR043141 -
Gabi3842g00049 321 CDD Ribosomal_P0_L10e 9 185 - -
Gabi3842g00049 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Gabi3842g00049 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Gabi3842g00049 321 MobiDBLite consensus disorder prediction 292 321 - -
Gabi3842g00049 321 Gene3D - 114 185 IPR043164 -
Gabi3842g00049 321 Pfam Ribosomal protein L10 8 108 IPR001790 -
Gabi3842g00049 321 Pfam 60s Acidic ribosomal protein 236 320 - -
Gabi3842g00049 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Gabi3842g00049 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 303 - -
Gabi3842g00049 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00049 Gabi-Chr3842 593443 599646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00049 1 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 80.000 0.0 501