Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00048 ATGTGTTGGTGGGCCAGCCTTCCGAGTCGAATCCAGTTTGCCACCTATAACTATCAGAATGTTGGAGCTCCTGCTCGCGTTGGTTTGATTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACTGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTTGCCCTGTGGAACTCATCAAGAAGGGAGACAAGGTCGGCTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTACTCATATGGTCTTGTGGTGTTTTCGGTTTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTAGTGAGGATGACCTCATTGAGAAGTTTGCTATTGGTGTCTCAATGGTTACTTCACTTTCGTTGGCGATCTCATACGCCACACTTGCAGCTGCACCGCATATGTTTGTCAATGCATATAAGAATGTTCTTGGTGTAGCAGTTGAGACGGAATATTCTTTCCCTCGGGCAGACAAAGTTAAGGAGCTCCTGAAGGTGTTGGATTTAACATTTTGA 573 0.4607 MCWWASLPSRIQFATYNYQNVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIICPVELIKKGDKVGSSEAALLAKLGIRPYSYGLVVFSVYDNGSVFSPEVLDLSEDDLIEKFAIGVSMVTSLSLAISYATLAAAPHMFVNAYKNVLGVAVETEYSFPRADKVKELLKVLDLTF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00048 190 Gene3D - 18 123 IPR043141 -
Gabi3842g00048 190 Pfam Insertion domain in 60S ribosomal protein L10P 25 94 IPR040637 -
Gabi3842g00048 190 Gene3D - 21 99 IPR043164 -
Gabi3842g00048 190 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 20 184 - -
Gabi3842g00048 190 FunFam 60S acidic ribosomal protein P0 24 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00048 Gabi-Chr3842 575593 577031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00048 20 184 Cytoplasmic Ribosomal Protein Gene Family AT3G09200 85.455 2.90e-100 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00048 K02941 - gmx:100777482 291.967