Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00047 ATGGCGGTCAAACCTACCAAGGCCGAGAAGAAGGTCACGTACGATGCGAAGCTGTGCAAGCTCTTGGACGAGTATTCTCAGATCCTTGTGGTGAACGCCGACAACGTCGGATCCAACCAGCTGCAGGACATCCGCAAGGGCCTCCGTGGCGACACGGTGGTTCTCATGGGAAAGAACACCATGATGAAGCGCTCCGTTAGGATTCATGCTGAGAACTCAGGCAACAATGCCTATCTCAACCTTATCCCTCTTCTTGTCGGCAATGTGGGGTTGATTTTCACAAAAGGTGACTTGAAGGAGGTTAGCGAAGACCTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGCGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACTGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTTGCCCTGTGGAACTCATCAAGAAGGGAGACAAGGTCGGCTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTTCTCATATGGTCTTGTGGTGCTTTCGGTTTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTAGTGAGGATGACCTCGTTGAGAAGTTTGGTATTGGTGTCTCAATGGTTACTTCACTTTCGTTGGCGATCTCATACGCCACACTTGCAGCTGCACCGCATATGTTTGTCAATGCATATAAGAACGTTCTTGGTGTAGCAGTTGAGACAGAATATTCTTTCCCTCGGGCAGACAAGGTTAAGGAGCTCCTGAAGGTGTTGGATTTAACATTTTGA 840 0.4857 MAVKPTKAEKKVTYDAKLCKLLDEYSQILVVNADNVGSNQLQDIRKGLRGDTVVLMGKNTMMKRSVRIHAENSGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEDLAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIICPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLSEDDLVEKFGIGVSMVTSLSLAISYATLAAAPHMFVNAYKNVLGVAVETEYSFPRADKVKELLKVLDLTF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00047 279 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 273 - -
Gabi3842g00047 279 CDD Ribosomal_P0_L10e 9 185 - -
Gabi3842g00047 279 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Gabi3842g00047 279 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Gabi3842g00047 279 Gene3D - 6 209 IPR043141 -
Gabi3842g00047 279 FunFam 60S acidic ribosomal protein P0 113 186 - -
Gabi3842g00047 279 Pfam Ribosomal protein L10 8 108 IPR001790 -
Gabi3842g00047 279 Gene3D - 114 185 IPR043164 -
Gabi3842g00047 279 PIRSF L10E 1 276 IPR030670 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00047 Gabi-Chr3842 572448 574675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00047 1 273 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 85.348 1.35e-171 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00047 K02941 - jre:108991896 478.789