Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00044 ATGGAATTGGAAGCAGATTACCAAAATGGTATCCGAAGTAGACCCAATTTCCCTCTCCAGCTGTTAGAGAAAAAAGACGCTGATGATGTCTCCGAACAACCTTGTTCCACCACCGTACACGACGGCGGCGCCATCACAACAACCACCACCAATTTCAACAACAACAACGACAACCAGGTCATCTCGGCTGAGCAGCCCAAGAAGCCGCCTCCGAAACGCGCCTCCACCAAGGACCGGCACACCAAGGTGGACGGCCGCGGCCGCCGGATCCGCATGCCGGCGGCGTGCGCCGCCAGGGTGTTCCAGCTGACGCGGGAGCTCGGTCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTCATCGCCGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCACTCCGAAGCTCCGGTTCCACCATGTCGGCGCCGTCGCACTACTTCCGTGGCGGAAGCTACTTAAACCCTAACAACTTCTCCTCCTCCTCAGCCGCCACGCAGATGAGGAACCGCGCCGCCGCTGAGTGGGACAGGAACATGAACATGGCGGCGGTGGAAGATTCTCGTAGCAGGACGATGTTGTTCCCCGGTTCCTCGGAGAACTCTTCTTCAATCTCCGCGATTTTGAATTTTAATAATCCTGTCGGTAACGTGAATGCCATTCTACAAGCGAAGCAGGAGCTCCGGGAAGAACCCGGCTGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGGCTTGAATTGGTGGCTGCAGATTCTGATGGAAGCTTAGGAAGAAAGAGAAGGGCAGAGCAAGAACTGTCACAGATGGGAAGCTACTTGTTACAATCAAGTACAGGGTCGCTTCCGGCGAGTCATGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAAAATATGAACGGTGGTGGCAATGGCGTTGATCCCATTTGGGCAATTCCTTCTATTGGGAATAGTGGAATGTATAGAAGGGCCATGTCTTCTGCTGGTGGTATTCATTTCATGAATTTTGCTTCTCCAATGCCTCTTATGCCCGGAGGACAATTAGGTTCAGGGATGGTTGGCGGCGGTGGCGGTGGTGCTACTCTTCTAAATGAGAGCAACTTAGGTATGCTTGCTGCCCTTAATGCCTATAGGCAGATTCCGATTCCGGCCAACGGAGTTTCGGAGTCTCCGGCCAGCACCCGGCAACATCACGGAGGAGAAGATGGACATGAAACAACCAGTCAACATTCCTGA 1287 0.5587 MELEADYQNGIRSRPNFPLQLLEKKDADDVSEQPCSTTVHDGGAITTTTTNFNNNNDNQVISAEQPKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGGSYLNPNNFSSSSAATQMRNRAAAEWDRNMNMAAVEDSRSRTMLFPGSSENSSSISAILNFNNPVGNVNAILQAKQELREEPGCGGGGGGGGGGLELVAADSDGSLGRKRRAEQELSQMGSYLLQSSTGSLPASHASNTAAFWMVAGHGNQNMNGGGNGVDPIWAIPSIGNSGMYRRAMSSAGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGATLLNESNLGMLAALNAYRQIPIPANGVSESPASTRQHHGGEDGHETTSQHS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00044 428 Pfam TCP family transcription factor 75 200 IPR017887 -
Gabi3842g00044 428 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Gabi3842g00044 428 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 425 IPR005333 GO:0003700
Gabi3842g00044 428 MobiDBLite consensus disorder prediction 27 84 - -
Gabi3842g00044 428 MobiDBLite consensus disorder prediction 32 63 - -
Gabi3842g00044 428 MobiDBLite consensus disorder prediction 402 428 - -
Gabi3842g00044 428 MobiDBLite consensus disorder prediction 412 428 - -
Gabi3842g00044 428 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00044 Gabi-Chr3842 524369 526301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00044 15 364 TCP Transcription Factor Family AT3G47620 40.389 2.00e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi3842g00044 TCP 9.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00044 - - vum:124821453 576.244