Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00028 ATGGCTTTCTTCCAAGCAAATTTCATGCTACAAACTCCTCATCGTGATGATCATCAACCTCCACCTTCGGTCAACTCAATTCAACCCCCATATACACCTCAAGATTATCATGGTGTAGCATCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAAGTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGAATCACAGGCAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTGGCAAGGGTTCTTGGGTTGCAACCAAGACAGATTTCTATTTGGTTCCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATAATCTCCTTAAAAGACAGTATGAAGCTATCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGGAGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTAAACAAAGAAACAGAAGGATCATGCAGCAATAGAAGTGAGAACAGCTCAGAGATCAAGTTGGATATCTCAAGGACACCAGCAAATGACAGTCCTCTATCCATACATCAGCCTAGTAGAACCCTCTTTCCATCAACTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGGCCTGACATCCAATGCCAAAAGATTGATCAAATGGTCAAAGAAGAAAGCTTAAGCAGCATGTTTTGTGGCATAGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCACCAACATATCAATTGA 840 0.4274 MAFFQANFMLQTPHRDDHQPPPSVNSIQPPYTPQDYHGVASFLGKRSMSFSSGIEVGEEANAEEDLSDDESQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARVLGLQPRQISIWFQNRRARWKTKQLEKDYNLLKRQYEAIKSDNDALQAQNQKLQGEILALKSREPTESINLNKETEGSCSNRSENSSEIKLDISRTPANDSPLSIHQPSRTLFPSTARPAGVAQLFQTSSRPDIQCQKIDQMVKEESLSSMFCGIDDQSGFWPWLEHQHIN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00028 279 SUPERFAMILY Homeodomain-like 68 133 IPR009057 -
Gabi3842g00028 279 CDD homeodomain 76 132 IPR001356 GO:0003677
Gabi3842g00028 279 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Gabi3842g00028 279 SMART HOX_1 74 135 IPR001356 GO:0003677
Gabi3842g00028 279 MobiDBLite consensus disorder prediction 10 36 - -
Gabi3842g00028 279 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Gabi3842g00028 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 209 IPR045224 GO:0003700
Gabi3842g00028 279 MobiDBLite consensus disorder prediction 176 195 - -
Gabi3842g00028 279 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Gabi3842g00028 279 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Gabi3842g00028 279 Gene3D - 67 137 - -
Gabi3842g00028 279 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Gabi3842g00028 279 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Gabi3842g00028 279 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Gabi3842g00028 279 MobiDBLite consensus disorder prediction 179 195 - -
Gabi3842g00028 279 Coils Coil 123 171 - -
Gabi3842g00028 279 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00028 Gabi-Chr3842 337949 339826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00028 1 279 Homeobox Transcription Factor Family AT1G69780 61.017 7.03e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3842g00028 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00028 K09338 - gmx:100814080 483.026