Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00024 ATGCAAGGTATGAAGAAGCAGCAGAAGCAGAAGCAGTTGGCCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAAATTGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTATTTTTGAACACGATTATAATACAGATGCGGCTTCGGCACCTGCAGTAGCTATCAAGAAGATGAGGCGATCACATATCCCTGATGGTTCAGAAAAAATCAACTTTGGAGACAGATCCCATAAACAAAATGGAACTCCAATAAATCAGCAGCCGAGAGCACCTTTTGCAGTTTTAGCTAACTCTCATAATGTCAACAACTTGACAGACCAGCATCATGTATGCAATGTGAAGTTTAGTGGTTATGCCCAAAACAACAATGTTCAAGGAACATTCCTCAAAAAGGATGACCCTAAGATAAGCGCATTGATGCAACAAGCTGAGTTACTAAGTTCACTAGCTCTAAAAGTTGACGCAGAGAACATGGAGCAAAGTCTTGAAGATGCATGGAAGGTTCTTCAAGAGTTTATGAACCGAACCAGAGAATCAGATATTCCCAGATATAAGATTCCAGATCTACTGCTTGTAGATCTTAAAGATTTGTTGGAAGACTTAAAAAGTACTAGTGTGGGAATCCAGCCATGTTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGAATCAACTCTCCCTCATCCAGCTAGTGAGAATTTGGAAAACTCACTGCATCAGGATATTGGAACTGAACTGAGGTCTATCCAAATTGGAGATCAAAAAGGAGTTAGAGGATGTGACCAAGGGATTCTTTCTAGTGCAACTGTGGATCAAGAATTGGTAGCAGATATGTTCCCATCTTGTGCGGAACAAATAAACAATGATGGCATTGTTTCTGCCTTATCAAGTACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGCTGCAGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCTCTCAATCCAAGTGCCAACCCCTCACAACCGCCGCTCTGCAAAAGAGCCCTCCTACATAGTTTATAA 1437 0.4078 MQGMKKQQKQKQLANEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIIFEHDYNTDAASAPAVAIKKMRRSHIPDGSEKINFGDRSHKQNGTPINQQPRAPFAVLANSHNVNNLTDQHHVCNVKFSGYAQNNNVQGTFLKKDDPKISALMQQAELLSSLALKVDAENMEQSLEDAWKVLQEFMNRTRESDIPRYKIPDLLLVDLKDLLEDLKSTSVGIQPCWRQMELYEDSPGSSEYSTESTLPHPASENLENSLHQDIGTELRSIQIGDQKGVRGCDQGILSSATVDQELVADMFPSCAEQINNDGIVSALSSTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANPSQPPLCKRALLHSL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00024 478 Gene3D - 79 148 - -
Gabi3842g00024 478 PANTHER MYB PROTEIN-RELATED 27 182 - -
Gabi3842g00024 478 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Gabi3842g00024 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Gabi3842g00024 478 Pfam Myb-like DNA-binding domain 28 88 - -
Gabi3842g00024 478 Gene3D - 15 76 - -
Gabi3842g00024 478 Coils Coil 4 24 - -
Gabi3842g00024 478 SMART sant 24 73 IPR001005 -
Gabi3842g00024 478 SMART sant 76 124 IPR001005 -
Gabi3842g00024 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Gabi3842g00024 478 CDD SANT 80 121 IPR001005 -
Gabi3842g00024 478 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Gabi3842g00024 478 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3842g00024 478 FunFam Transcription factor MYB124 20 76 - -
Gabi3842g00024 478 CDD SANT 27 71 IPR001005 -
Gabi3842g00024 478 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00024 Gabi-Chr3842 265177 272194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00024 13 323 MYB Transcription Factor Family AT2G02820 62.025 8.24e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3842g00024 Myb_DNA-bind_6 8.3e-15 CL0123